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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    808401 8vs9:S21 (3.9) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38500588
    808402 8vs9:SMPB (3.9) BS01 rna ? GO:0003723 ... A0A2X1N680 38500588
    808403 8vs9:SMPB (3.9) BS02 rna ? GO:0003723 ... A0A2X1N680 38500588
    808404 8vs9:SMPB (3.9) BS03 rna ? GO:0003723 ... A0A2X1N680 38500588
    808405 8vs9:SMPB (3.9) BS04 rna ? GO:0003723 ... A0A2X1N680 38500588
    808406 8vsa:L02 (3.7) BS01 rna ? GO:0000027 ... P60422 38500588
    808407 8vsa:L02 (3.7) BS02 rna ? GO:0000027 ... P60422 38500588
    808408 8vsa:L03 (3.7) BS01 rna ? GO:0000027 ... P60438 38500588
    808409 8vsa:L04 (3.7) BS01 rna ? GO:0003735 ... A1AGK6 38500588
    808410 8vsa:L05 (3.7) BS01 rna ? GO:0000049 ... A0A140N5A3 38500588
    808411 8vsa:L05 (3.7) BS02 rna ? GO:0000049 ... A0A140N5A3 38500588
    808412 8vsa:L05 (3.7) BS03 rna ? GO:0000049 ... A0A140N5A3 38500588
    808413 8vsa:L06 (3.7) BS01 rna ? GO:0002181 ... C3SR17 38500588
    808414 8vsa:L09 (3.7) BS01 rna ? GO:0003735 ... C3SFP2 38500588
    808415 8vsa:L1 (3.7) BS01 rna ? GO:0000049 ... B7MIX0 38500588
    808416 8vsa:L10 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    808417 8vsa:L11 (3.7) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    808418 8vsa:L13 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808419 8vsa:L14 (3.7) BS01 rna ? GO:0003735 ... S1NW45 38500588
    808420 8vsa:L14 (3.7) BS02 rna ? GO:0003735 ... S1NW45 38500588
    808421 8vsa:L15 (3.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 38500588
    808422 8vsa:L16 (3.7) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    808423 8vsa:L16 (3.7) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    808424 8vsa:L16 (3.7) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    808425 8vsa:L17 (3.7) BS01 rna ? GO:0003735 ... C3SR72 38500588
    808426 8vsa:L18 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808427 8vsa:L18 (3.7) BS02 rna N/A GO:0003735 ... N/A 38500588
    808428 8vsa:L19 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808429 8vsa:L19 (3.7) BS02 rna N/A GO:0003735 ... N/A 38500588
    808430 8vsa:L20 (3.7) BS01 rna ? GO:0000027 ... B7MAS6 38500588
    808431 8vsa:L21 (3.7) BS01 rna ? GO:0003723 ... C3SSG2 38500588
    808432 8vsa:L22 (3.7) BS01 rna ? GO:0002181 ... P61175 38500588
    808433 8vsa:L23 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808434 8vsa:L24 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    808435 8vsa:L25 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808436 8vsa:L27 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    808437 8vsa:L27 (3.7) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    808438 8vsa:L28 (3.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 38500588
    808439 8vsa:L29 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808440 8vsa:L30 (3.7) BS01 rna ? GO:0003735 ... C3SR32 38500588
    808441 8vsa:L30 (3.7) BS02 rna ? GO:0003735 ... C3SR32 38500588
    808442 8vsa:L31 (3.7) BS01 rna ? GO:0003735 ... C3SIV2 38500588
    808443 8vsa:L32 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808444 8vsa:L33 (3.7) BS01 rna ? GO:0003735 ... C3SME7 38500588
    808445 8vsa:L34 (3.7) BS01 rna ? GO:0003735 ... B7MGC4 38500588
    808446 8vsa:L35 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    808447 8vsa:L36 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L017 38500588
    808448 8vsa:S02 (3.7) BS01 rna ? GO:0003735 ... C3TPN2 38500588
    808449 8vsa:S02 (3.7) BS02 rna ? GO:0003735 ... C3TPN2 38500588
    808450 8vsa:S03 (3.7) BS01 rna ? GO:0003676 ... B7MCS9 38500588
    808451 8vsa:S03 (3.7) BS02 rna ? GO:0003676 ... B7MCS9 38500588
    808452 8vsa:S04 (3.7) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    808453 8vsa:S05 (3.7) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    808454 8vsa:S05 (3.7) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    808455 8vsa:S06 (3.7) BS01 rna ? GO:0002181 ... P02358 38500588
    808456 8vsa:S07 (3.7) BS01 rna ? GO:0000028 ... P02359 38500588
    808457 8vsa:S08 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    808458 8vsa:S09 (3.7) BS01 rna ? GO:0000028 ... C3SRY2 38500588
    808459 8vsa:S10 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    808460 8vsa:S11 (3.7) BS01 rna ? GO:0003735 ... B7MCR3 38500588
    808461 8vsa:S12 (3.7) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    808462 8vsa:S13 (3.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 38500588
    808463 8vsa:S13 (3.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 38500588
    808464 8vsa:S14 (3.7) BS01 rna ? GO:0003735 ... A0A2X1PQW4 38500588
    808465 8vsa:S15 (3.7) BS01 rna ? GO:0000028 ... C3SSQ7 38500588
    808466 8vsa:S15 (3.7) BS02 rna ? GO:0000028 ... C3SSQ7 38500588
    808467 8vsa:S16 (3.7) BS01 rna ? GO:0000028 ... C3SYP2 38500588
    808468 8vsa:S17 (3.7) BS01 rna ? GO:0000028 ... C3SQY7 38500588
    808469 8vsa:S18 (3.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38500588
    808470 8vsa:S19 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    808471 8vsa:S19 (3.7) BS02 rna N/A GO:0003723 ... N/A 38500588
    808472 8vsa:S20 (3.7) BS01 rna ? GO:0000028 ... C3TRH7 38500588
    808473 8vsa:S21 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38500588
    808474 8vsa:SMPB (3.7) BS01 rna ? GO:0003723 ... A0A2X1N680 38500588
    808475 8vsa:SMPB (3.7) BS02 rna ? GO:0003723 ... A0A2X1N680 38500588
    808476 8vsa:SMPB (3.7) BS03 rna ? GO:0003723 ... A0A2X1N680 38500588
    808477 8vsg:A (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38518735
    808478 8vsg:B (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38518735
    808479 8vsh:A (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    808480 8vsh:B (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    808481 8vsh:C (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    808482 8vsh:D (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    808483 8vsi:A (3.1) BS01 MG 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    808484 8vsi:A (3.1) BS02 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    808485 8vsi:A (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    808486 8vsi:B (3.1) BS01 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    808487 8vsi:B (3.1) BS02 MG 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    808488 8vsi:B (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    808489 8vsk:AAA (1.515) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    808490 8vsk:AAA (1.515) BS02 OXY N/A GO:0004601 ... Q9NAV8 38959050
    808491 8vsk:BBB (1.515) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    808492 8vsk:BBB (1.515) BS02 Y8I N/A GO:0004601 ... Q9NAV8 38959050
    808493 8vsu:B (2.86) BS01 ADP N/A GO:0004672 ... Q7RTN6 38944401
    808494 8vt7:A (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    808495 8vt7:B (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    808496 8vt7:F (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    808497 8vt7:J (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    808498 8vtj:L (2.81) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    808499 8vtj:L (2.81) BS02 BPH ? GO:0009772 ... Q3J1A5 N/A
    808500 8vtj:L (2.81) BS03 BCL ? GO:0009772 ... Q3J1A5 N/A
    808501 8vtj:L (2.81) BS04 FE ? GO:0009772 ... Q3J1A5 N/A
    808502 8vtj:L (2.81) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    808503 8vtj:L (2.81) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    808504 8vtj:M (2.81) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    808505 8vtj:M (2.81) BS02 BPH ? GO:0009772 ... Q3J1A6 N/A
    808506 8vtj:M (2.81) BS03 BCL ? GO:0009772 ... Q3J1A6 N/A
    808507 8vtj:M (2.81) BS04 FE ? GO:0009772 ... Q3J1A6 N/A
    808508 8vtj:M (2.81) BS05 BPH ? GO:0009772 ... Q3J1A6 N/A
    808509 8vtj:M (2.81) BS06 SPO ? GO:0009772 ... Q3J1A6 N/A
    808510 8vtj:M (2.81) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    808511 8vtk:L (3.07) BS01 BPH ? GO:0009772 ... Q3J1A5 N/A
    808512 8vtk:L (3.07) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    808513 8vtk:L (3.07) BS03 BPH ? GO:0009772 ... Q3J1A5 N/A
    808514 8vtk:L (3.07) BS04 BCL ? GO:0009772 ... Q3J1A5 N/A
    808515 8vtk:L (3.07) BS05 BCL ? GO:0009772 ... Q3J1A5 N/A
    808516 8vtk:M (3.07) BS01 BPH ? GO:0009772 ... Q3J1A6 N/A
    808517 8vtk:M (3.07) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    808518 8vtk:M (3.07) BS03 BPH ? GO:0009772 ... Q3J1A6 N/A
    808519 8vtk:M (3.07) BS04 BCL ? GO:0009772 ... Q3J1A6 N/A
    808520 8vtk:M (3.07) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    808521 8vtk:M (3.07) BS06 BCL ? GO:0009772 ... Q3J1A6 N/A
    808522 8vtl:L (3.05) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    808523 8vtl:L (3.05) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    808524 8vtl:L (3.05) BS03 BCL ? GO:0009772 ... P0C0Y8 N/A
    808525 8vtl:L (3.05) BS04 FE ? GO:0009772 ... P0C0Y8 N/A
    808526 8vtl:L (3.05) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    808527 8vtl:L (3.05) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    808528 8vtl:M (3.05) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    808529 8vtl:M (3.05) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    808530 8vtl:M (3.05) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    808531 8vtl:M (3.05) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    808532 8vtl:M (3.05) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    808533 8vtl:M (3.05) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    808534 8vtl:M (3.05) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    808535 8vtm:L (3.51) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    808536 8vtm:L (3.51) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    808537 8vtm:L (3.51) BS03 FE ? GO:0009772 ... Q3J1A5 N/A
    808538 8vtm:L (3.51) BS04 BPH ? GO:0009772 ... Q3J1A5 N/A
    808539 8vtm:L (3.51) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    808540 8vtm:L (3.51) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    808541 8vtm:M (3.51) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    808542 8vtm:M (3.51) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    808543 8vtm:M (3.51) BS03 FE ? GO:0009772 ... Q3J1A6 N/A
    808544 8vtm:M (3.51) BS04 BPH ? GO:0009772 ... Q3J1A6 N/A
    808545 8vtm:M (3.51) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    808546 8vtm:M (3.51) BS06 BPH ? GO:0009772 ... Q3J1A6 N/A
    808547 8vtm:M (3.51) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    808548 8vtn:L (3.57) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    808549 8vtn:L (3.57) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    808550 8vtn:L (3.57) BS03 FE ? GO:0009772 ... P0C0Y8 N/A
    808551 8vtn:L (3.57) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    808552 8vtn:L (3.57) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    808553 8vtn:L (3.57) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    808554 8vtn:M (3.57) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    808555 8vtn:M (3.57) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    808556 8vtn:M (3.57) BS03 FE ? GO:0009772 ... P0C0Y9 N/A
    808557 8vtn:M (3.57) BS04 BPH ? GO:0009772 ... P0C0Y9 N/A
    808558 8vtn:M (3.57) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    808559 8vtn:M (3.57) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    808560 8vtn:M (3.57) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    808561 8vto:L (3.09) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    808562 8vto:L (3.09) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    808563 8vto:L (3.09) BS03 BPH ? GO:0009772 ... P0C0Y8 N/A
    808564 8vto:L (3.09) BS04 BCL ? GO:0009772 ... P0C0Y8 N/A
    808565 8vto:L (3.09) BS05 FE ? GO:0009772 ... P0C0Y8 N/A
    808566 8vto:L (3.09) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    808567 8vto:M (3.09) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    808568 8vto:M (3.09) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    808569 8vto:M (3.09) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    808570 8vto:M (3.09) BS04 BCL ? GO:0009772 ... P0C0Y9 N/A
    808571 8vto:M (3.09) BS05 FE ? GO:0009772 ... P0C0Y9 N/A
    808572 8vto:M (3.09) BS06 SPO ? GO:0009772 ... P0C0Y9 N/A
    808573 8vto:M (3.09) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    808574 8vts:B (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    808575 8vts:D (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    808576 8vtt:D (2.45) BS01 RIO ? GO:0003677 ... Q60954 39183959
    808577 8vuw:A (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    808578 8vuw:A (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    808579 8vuw:B (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    808580 8vuw:B (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    808581 8vuw:C (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    808582 8vuw:C (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    808583 8vuw:D (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    808584 8vuw:D (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    808585 8vuw:E (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    808586 8vuw:E (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    808587 8vv3:A (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    808588 8vv3:B (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    808589 8vv3:C (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    808590 8vv3:D (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    808591 8vw0:A (1.7) BS01 AMP 6.3.2.9 GO:0005515 ... P14900 N/A
    808592 8vw0:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    808593 8vw0:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    808594 8vw0:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    808595 8vw0:A (1.7) BS05 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    808596 8vw1:A (1.7) BS01 ADP 6.3.2.9 GO:0005515 ... P14900 N/A
    808597 8vw1:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    808598 8vw1:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    808599 8vw1:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    808600 8vw2:A (1.95) BS01 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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