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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    807601 8vfc:A (2.48) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807602 8vfd:A (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807603 8vfd:A (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807604 8vfd:A (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807605 8vfd:A (2.1) BS04 A1ACD 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807606 8vfd:A (2.1) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807607 8vfd:A (2.1) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807608 8vfe:A (2.09) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807609 8vfe:A (2.09) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807610 8vfe:A (2.09) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807611 8vff:A (1.69) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807612 8vff:A (1.69) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807613 8vff:A (1.69) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807614 8vfg:A (1.54) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807615 8vfg:A (1.54) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807616 8vfg:A (1.54) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807617 8vfh:A (2.01) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807618 8vfh:A (2.01) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807619 8vfh:A (2.01) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807620 8vfh:A (2.01) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807621 8vfh:A (2.01) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807622 8vfh:A (2.01) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807623 8vfi:A (1.77) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807624 8vfi:A (1.77) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807625 8vfi:A (1.77) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807626 8vfi:A (1.77) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807627 8vfi:A (1.77) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807628 8vfi:A (1.77) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807629 8vfj:A (2.14) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807630 8vfj:A (2.14) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807631 8vfj:A (2.14) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807632 8vfp:A (2.7) BS01 4MA ? GO:0004497 ... Q2IU02 N/A
    807633 8vfp:A (2.7) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    807634 8vfr:A (2.018) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    807635 8vfr:A (2.018) BS02 4MA ? GO:0004497 ... Q2IU02 N/A
    807636 8vfr:A (2.018) BS03 E5X ? GO:0004497 ... Q2IU02 N/A
    807637 8vg5:A (1.5) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    807638 8vg8:A (1.33) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    807639 8vgc:A (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    807640 8vgc:B (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    807641 8vgd:A (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    807642 8vgd:B (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    807643 8vgz:A (2.09) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    807644 8vgz:A (2.09) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    807645 8vh9:A (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807646 8vh9:B (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807647 8vha:A (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    807648 8vha:A (2.28) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    807649 8vha:B (2.28) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807650 8vha:B (2.28) BS02 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    807651 8vha:C (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    807652 8vha:D (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    807653 8vha:D (2.28) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807654 8vhb:A (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    807655 8vhb:A (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807656 8vhb:B (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    807657 8vhb:C (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    807658 8vhb:C (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807659 8vhb:D (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    807660 8vhc:A (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807661 8vhc:B (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    807662 8vhd:A (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    807663 8vhd:A (2.38) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    807664 8vhd:B (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    807665 8vhd:C (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    807666 8vhd:D (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    807667 8vhd:D (2.38) BS02 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    807668 8vhd:D (2.38) BS03 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    807669 8vhe:A (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    807670 8vhe:A (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    807671 8vhe:B (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    807672 8vhe:B (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    807673 8vhe:C (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    807674 8vhe:C (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    807675 8vhe:D (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    807676 8vhe:D (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    807677 8vhl:A (1.93) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    807678 8vhl:A (1.93) BS02 A1AA2 1.3.5.2 GO:0004151 ... Q02127 38505861
    807679 8vhm:A (2.26) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    807680 8vhm:A (2.26) BS02 A1AA1 1.3.5.2 GO:0004151 ... Q02127 38505861
    807681 8vhw:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    807682 8vhw:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    807683 8vhy:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    807684 8vhy:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    807685 8vij:A (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    807686 8vij:B (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    807687 8vij:C (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    807688 8vij:D (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    807689 8vis:B (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    807690 8vis:D (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    807691 8vis:D (1.59) BS02 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    807692 8vis:F (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    807693 8vis:H (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    807694 8vis:H (1.59) BS02 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    807695 8vj0:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    807696 8vj0:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    807697 8vj3:A (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    807698 8vj3:B (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    807699 8vj3:C (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    807700 8vj3:D (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    807701 8vj4:A (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    807702 8vj4:B (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    807703 8vj5:A (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    807704 8vj5:B (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    807705 8vj6:A (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    807706 8vj6:B (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    807707 8vj6:C (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    807708 8vj6:D (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    807709 8vj7:A (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    807710 8vj7:A (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    807711 8vj7:B (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    807712 8vj7:B (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    807713 8vj7:C (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    807714 8vj7:C (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    807715 8vj7:D (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    807716 8vj7:D (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    807717 8vj8:A (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    807718 8vj8:B (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    807719 8vjj:A (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807720 8vjj:B (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807721 8vjj:C (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807722 8vjj:D (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807723 8vjk:A (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807724 8vjk:A (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807725 8vjk:A (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807726 8vjk:A (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807727 8vjk:A (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807728 8vjk:B (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807729 8vjk:B (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807730 8vjk:B (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807731 8vjk:B (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807732 8vjk:B (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807733 8vjk:C (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807734 8vjk:C (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807735 8vjk:C (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807736 8vjk:C (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807737 8vjk:C (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807738 8vjk:D (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807739 8vjk:D (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807740 8vjk:D (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807741 8vjk:D (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807742 8vjk:D (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807743 8vjo:A (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    807744 8vjo:B (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    807745 8vjo:C (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    807746 8vjp:A (1.13) BS01 peptide ? GO:0042981 ... Q07820 38695666
    807747 8vk3:A (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807748 8vk3:B (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807749 8vk3:C (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807750 8vk3:D (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807751 8vk4:A (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807752 8vk4:A (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807753 8vk4:A (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807754 8vk4:A (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807755 8vk4:A (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807756 8vk4:B (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807757 8vk4:B (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807758 8vk4:B (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807759 8vk4:B (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807760 8vk4:B (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807761 8vk4:C (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807762 8vk4:C (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807763 8vk4:C (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807764 8vk4:C (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807765 8vk4:C (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807766 8vk4:D (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    807767 8vk4:D (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    807768 8vk4:D (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    807769 8vk4:D (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    807770 8vk4:D (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    807771 8vk4:I (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807772 8vk4:I (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807773 8vk4:J (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807774 8vk4:J (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807775 8vk4:K (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807776 8vk4:K (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807777 8vk4:L (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807778 8vk4:L (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807779 8vk4:M (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807780 8vk4:M (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807781 8vk4:N (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807782 8vk4:N (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807783 8vk4:O (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807784 8vk4:O (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807785 8vk4:P (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    807786 8vk4:P (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    807787 8vka:A (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    807788 8vka:A (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    807789 8vka:B (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    807790 8vka:B (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    807791 8vka:C (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    807792 8vka:C (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    807793 8vkb:A (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    807794 8vkb:A (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    807795 8vkb:B (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    807796 8vkb:B (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    807797 8vkb:C (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    807798 8vkb:C (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    807799 8vkc:AAA (2.03) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    807800 8vkc:AAA (2.03) BS02 NPO N/A GO:0004601 ... Q9NAV8 38959050
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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