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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    805601 8uu4:L (3.0) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    805602 8uu4:M (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    805603 8uu4:M (3.0) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    805604 8uu4:N (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    805605 8uu4:O (3.0) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    805606 8uu4:O (3.0) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    805607 8uu4:P (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    805608 8uu4:Q (3.0) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805609 8uu4:Q (3.0) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805610 8uu4:R (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    805611 8uu4:R (3.0) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    805612 8uu4:S (3.0) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    805613 8uu4:T (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    805614 8uu4:U (3.0) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    805615 8uu4:V (3.0) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    805616 8uu4:W (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    805617 8uu4:Y (3.0) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    805618 8uu4:Y (3.0) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    805619 8uu4:Z (3.0) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    805620 8uu4:b (3.0) BS01 rna N/A GO:0003735 ... N/A 38407413
    805621 8uu4:c (3.0) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    805622 8uu4:d (3.0) BS01 rna N/A GO:0003723 ... N/A 38407413
    805623 8uu4:e (3.0) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    805624 8uu4:f (3.0) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    805625 8uu4:g (3.0) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    805626 8uu4:h (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    805627 8uu4:i (3.0) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    805628 8uu4:j (3.0) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    805629 8uu4:k (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    805630 8uu4:l (3.0) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    805631 8uu4:m (3.0) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    805632 8uu4:n (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    805633 8uu4:n (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    805634 8uu4:o (3.0) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    805635 8uu4:o (3.0) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    805636 8uu4:p (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    805637 8uu4:q (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    805638 8uu4:r (3.0) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    805639 8uu4:s (3.0) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    805640 8uu4:t (3.0) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    805641 8uu4:w (3.0) BS01 rna ? GO:0005737 ... A0A660JMK7 38407413
    805642 8uu5:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    805643 8uu5:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    805644 8uu5:2 (3.0) BS02 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    805645 8uu5:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    805646 8uu5:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    805647 8uu5:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    805648 8uu5:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    805649 8uu5:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    805650 8uu5:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    805651 8uu5:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    805652 8uu5:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    805653 8uu5:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    805654 8uu5:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    805655 8uu5:C (3.0) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    805656 8uu5:D (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    805657 8uu5:E (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    805658 8uu5:F (3.0) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805659 8uu5:F (3.0) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805660 8uu5:G (3.0) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    805661 8uu5:L (3.0) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    805662 8uu5:M (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    805663 8uu5:M (3.0) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    805664 8uu5:N (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    805665 8uu5:O (3.0) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    805666 8uu5:O (3.0) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    805667 8uu5:P (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    805668 8uu5:Q (3.0) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805669 8uu5:Q (3.0) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805670 8uu5:R (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    805671 8uu5:R (3.0) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    805672 8uu5:S (3.0) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    805673 8uu5:T (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    805674 8uu5:U (3.0) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    805675 8uu5:V (3.0) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    805676 8uu5:W (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    805677 8uu5:Y (3.0) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    805678 8uu5:Z (3.0) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    805679 8uu5:b (3.0) BS01 rna N/A GO:0003735 ... N/A 38407413
    805680 8uu5:c (3.0) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    805681 8uu5:d (3.0) BS01 rna N/A GO:0003723 ... N/A 38407413
    805682 8uu5:e (3.0) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    805683 8uu5:f (3.0) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    805684 8uu5:g (3.0) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    805685 8uu5:h (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    805686 8uu5:i (3.0) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    805687 8uu5:i (3.0) BS02 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    805688 8uu5:j (3.0) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    805689 8uu5:k (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    805690 8uu5:l (3.0) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    805691 8uu5:m (3.0) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    805692 8uu5:m (3.0) BS02 MG ? GO:0000049 ... A0A0U5ARJ0 38407413
    805693 8uu5:n (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    805694 8uu5:n (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    805695 8uu5:o (3.0) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    805696 8uu5:o (3.0) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    805697 8uu5:p (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    805698 8uu5:q (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    805699 8uu5:r (3.0) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    805700 8uu5:s (3.0) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    805701 8uu5:t (3.0) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    805702 8uu5:t (3.0) BS02 MG ? GO:0003723 ... A0A660JML5 38407413
    805703 8uu6:1 (3.3) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    805704 8uu6:2 (3.3) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    805705 8uu6:3 (3.3) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    805706 8uu6:4 (3.3) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    805707 8uu6:4 (3.3) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    805708 8uu6:5 (3.3) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    805709 8uu6:5 (3.3) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    805710 8uu6:6 (3.3) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    805711 8uu6:7 (3.3) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    805712 8uu6:8 (3.3) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    805713 8uu6:8 (3.3) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    805714 8uu6:C (3.3) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    805715 8uu6:C (3.3) BS02 rna ? GO:0002181 ... A0A0U5A742 38407413
    805716 8uu6:D (3.3) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    805717 8uu6:E (3.3) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    805718 8uu6:F (3.3) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805719 8uu6:F (3.3) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805720 8uu6:G (3.3) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    805721 8uu6:L (3.3) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    805722 8uu6:M (3.3) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    805723 8uu6:N (3.3) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    805724 8uu6:O (3.3) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    805725 8uu6:P (3.3) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    805726 8uu6:Q (3.3) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805727 8uu6:Q (3.3) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805728 8uu6:R (3.3) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    805729 8uu6:S (3.3) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    805730 8uu6:T (3.3) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    805731 8uu6:U (3.3) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    805732 8uu6:V (3.3) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    805733 8uu6:W (3.3) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    805734 8uu6:Y (3.3) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    805735 8uu6:Z (3.3) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    805736 8uu6:b (3.3) BS01 rna N/A GO:0003735 ... N/A 38407413
    805737 8uu6:c (3.3) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    805738 8uu6:d (3.3) BS01 rna N/A GO:0003723 ... N/A 38407413
    805739 8uu6:e (3.3) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    805740 8uu6:f (3.3) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    805741 8uu6:g (3.3) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    805742 8uu6:h (3.3) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    805743 8uu6:i (3.3) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    805744 8uu6:j (3.3) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    805745 8uu6:k (3.3) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    805746 8uu6:l (3.3) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    805747 8uu6:m (3.3) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    805748 8uu6:n (3.3) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    805749 8uu6:n (3.3) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    805750 8uu6:o (3.3) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    805751 8uu6:o (3.3) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    805752 8uu6:p (3.3) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    805753 8uu6:q (3.3) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    805754 8uu6:q (3.3) BS02 MG ? GO:0003735 ... A0A0U5ADR4 38407413
    805755 8uu6:r (3.3) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    805756 8uu6:s (3.3) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    805757 8uu6:t (3.3) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    805758 8uu7:1 (3.2) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    805759 8uu7:2 (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    805760 8uu7:3 (3.2) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    805761 8uu7:4 (3.2) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    805762 8uu7:4 (3.2) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    805763 8uu7:5 (3.2) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    805764 8uu7:5 (3.2) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    805765 8uu7:6 (3.2) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    805766 8uu7:7 (3.2) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    805767 8uu7:8 (3.2) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    805768 8uu7:8 (3.2) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    805769 8uu7:C (3.2) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    805770 8uu7:D (3.2) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    805771 8uu7:E (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    805772 8uu7:F (3.2) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805773 8uu7:F (3.2) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    805774 8uu7:G (3.2) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    805775 8uu7:L (3.2) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    805776 8uu7:M (3.2) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    805777 8uu7:M (3.2) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    805778 8uu7:N (3.2) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    805779 8uu7:O (3.2) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    805780 8uu7:P (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    805781 8uu7:Q (3.2) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805782 8uu7:Q (3.2) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    805783 8uu7:R (3.2) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    805784 8uu7:R (3.2) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    805785 8uu7:S (3.2) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    805786 8uu7:T (3.2) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    805787 8uu7:U (3.2) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    805788 8uu7:V (3.2) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    805789 8uu7:W (3.2) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    805790 8uu7:Y (3.2) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    805791 8uu7:Y (3.2) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    805792 8uu7:Z (3.2) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    805793 8uu7:b (3.2) BS01 rna N/A GO:0003735 ... N/A 38407413
    805794 8uu7:c (3.2) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    805795 8uu7:d (3.2) BS01 rna N/A GO:0003723 ... N/A 38407413
    805796 8uu7:e (3.2) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    805797 8uu7:f (3.2) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    805798 8uu7:g (3.2) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    805799 8uu7:g (3.2) BS02 rna ? GO:0000028 ... A0A660JPE1 38407413
    805800 8uu7:h (3.2) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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