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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    803001 8ud8:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    803002 8ud8:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    803003 8ud8:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    803004 8ud8:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    803005 8ud8:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    803006 8ud8:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    803007 8ud8:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    803008 8ud8:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    803009 8ud8:1T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    803010 8ud8:1T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    803011 8ud8:1U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    803012 8ud8:1U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    803013 8ud8:1U (2.6) BS03 MG ? GO:0000027 ... P60491 38359125
    803014 8ud8:1U (2.6) BS04 MG ? GO:0000027 ... P60491 38359125
    803015 8ud8:1U (2.6) BS05 MG ? GO:0000027 ... P60491 38359125
    803016 8ud8:1U (2.6) BS06 MG ? GO:0000027 ... P60491 38359125
    803017 8ud8:1U (2.6) BS07 MG ? GO:0000027 ... P60491 38359125
    803018 8ud8:1U (2.6) BS08 MG ? GO:0000027 ... P60491 38359125
    803019 8ud8:1U (2.6) BS09 MG ? GO:0000027 ... P60491 38359125
    803020 8ud8:1U (2.6) BS10 MG ? GO:0000027 ... P60491 38359125
    803021 8ud8:1V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    803022 8ud8:1V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    803023 8ud8:1V (2.6) BS03 MG ? GO:0003723 ... P60492 38359125
    803024 8ud8:1V (2.6) BS04 MG ? GO:0003723 ... P60492 38359125
    803025 8ud8:1V (2.6) BS05 MG ? GO:0003723 ... P60492 38359125
    803026 8ud8:1V (2.6) BS06 MG ? GO:0003723 ... P60492 38359125
    803027 8ud8:1V (2.6) BS07 MG ? GO:0003723 ... P60492 38359125
    803028 8ud8:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    803029 8ud8:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    803030 8ud8:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    803031 8ud8:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    803032 8ud8:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    803033 8ud8:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    803034 8ud8:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    803035 8ud8:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    803036 8ud8:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    803037 8ud8:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    803038 8ud8:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    803039 8ud8:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    803040 8ud8:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    803041 8ud8:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    803042 8ud8:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    803043 8ud8:1b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    803044 8ud8:1c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    803045 8ud8:1d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    803046 8ud8:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 38359125
    803047 8ud8:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    803048 8ud8:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    803049 8ud8:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    803050 8ud8:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    803051 8ud8:1g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    803052 8ud8:1g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    803053 8ud8:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    803054 8ud8:1i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    803055 8ud8:1i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    803056 8ud8:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    803057 8ud8:1k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    803058 8ud8:1k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    803059 8ud8:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    803060 8ud8:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    803061 8ud8:1m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    803062 8ud8:1m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    803063 8ud8:1m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    803064 8ud8:1m (2.6) BS04 MG ? GO:0000049 ... P80377 38359125
    803065 8ud8:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    803066 8ud8:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    803067 8ud8:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    803068 8ud8:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    803069 8ud8:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    803070 8ud8:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    803071 8ud8:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    803072 8ud8:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    803073 8ud8:1t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    803074 8ud8:20 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    803075 8ud8:20 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    803076 8ud8:20 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    803077 8ud8:21 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    803078 8ud8:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    803079 8ud8:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    803080 8ud8:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    803081 8ud8:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    803082 8ud8:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    803083 8ud8:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    803084 8ud8:25 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    803085 8ud8:25 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    803086 8ud8:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 38359125
    803087 8ud8:26 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    803088 8ud8:26 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    803089 8ud8:26 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    803090 8ud8:27 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    803091 8ud8:27 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    803092 8ud8:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    803093 8ud8:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    803094 8ud8:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    803095 8ud8:2D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    803096 8ud8:2D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    803097 8ud8:2D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    803098 8ud8:2D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    803099 8ud8:2D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    803100 8ud8:2D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    803101 8ud8:2D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    803102 8ud8:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    803103 8ud8:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    803104 8ud8:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    803105 8ud8:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    803106 8ud8:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    803107 8ud8:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    803108 8ud8:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    803109 8ud8:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    803110 8ud8:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    803111 8ud8:2G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    803112 8ud8:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    803113 8ud8:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    803114 8ud8:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    803115 8ud8:2N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    803116 8ud8:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    803117 8ud8:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    803118 8ud8:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    803119 8ud8:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    803120 8ud8:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    803121 8ud8:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    803122 8ud8:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    803123 8ud8:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    803124 8ud8:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    803125 8ud8:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    803126 8ud8:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    803127 8ud8:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    803128 8ud8:2T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    803129 8ud8:2T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    803130 8ud8:2T (2.6) BS03 MG ? GO:0003735 ... P60490 38359125
    803131 8ud8:2U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    803132 8ud8:2U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    803133 8ud8:2V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    803134 8ud8:2V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    803135 8ud8:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    803136 8ud8:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    803137 8ud8:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    803138 8ud8:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    803139 8ud8:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    803140 8ud8:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    803141 8ud8:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    803142 8ud8:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    803143 8ud8:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 38359125
    803144 8ud8:2b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    803145 8ud8:2c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    803146 8ud8:2d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    803147 8ud8:2d (2.6) BS02 MG ? GO:0003723 ... P80373 38359125
    803148 8ud8:2d (2.6) BS03 SF4 ? GO:0003723 ... P80373 38359125
    803149 8ud8:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    803150 8ud8:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    803151 8ud8:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    803152 8ud8:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    803153 8ud8:2g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    803154 8ud8:2g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    803155 8ud8:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    803156 8ud8:2i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    803157 8ud8:2i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    803158 8ud8:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    803159 8ud8:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 38359125
    803160 8ud8:2k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    803161 8ud8:2k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    803162 8ud8:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    803163 8ud8:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    803164 8ud8:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    803165 8ud8:2m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    803166 8ud8:2m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    803167 8ud8:2m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    803168 8ud8:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    803169 8ud8:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    803170 8ud8:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    803171 8ud8:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    803172 8ud8:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    803173 8ud8:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    803174 8ud8:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    803175 8ud8:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    803176 8ud8:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    803177 8ud8:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    803178 8ud8:2t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    803179 8ud8:2t (2.6) BS02 MG ? GO:0003723 ... P80380 38359125
    803180 8ud9:L (2.04) BS01 YRE 3.4.25.1 GO:0004298 ... P28074 38097652
    803181 8ud9:M (2.04) BS01 YRE 3.4.25.1 GO:0005839 ... P20618 38097652
    803182 8ud9:Z (2.04) BS01 YRE 3.4.25.1 GO:0004298 ... P28074 38097652
    803183 8ud9:a (2.04) BS01 YRE 3.4.25.1 GO:0005839 ... P20618 38097652
    803184 8udc:A (3.1) BS01 WCK 2.7.11.1 GO:0004672 ... D6WMX4 N/A
    803185 8udk:A (3.43) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    803186 8udk:A (3.43) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    803187 8udk:A (3.43) BS03 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    803188 8udk:B (3.43) BS01 dna 2.7.7.7 GO:0001701 ... Q9UHN1 38787958
    803189 8udl:A (2.37) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    803190 8udl:A (2.37) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    803191 8udt:A (2.829) BS01 WGF 2.7.10.1 GO:0004672 ... P22607 38267212
    803192 8udt:B (2.829) BS01 WGF 2.7.10.1 GO:0004672 ... P22607 38267212
    803193 8udt:C (2.829) BS01 WGF 2.7.10.1 GO:0004672 ... P22607 38267212
    803194 8udu:A (1.737) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    803195 8udu:B (1.737) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    803196 8udv:A (2.348) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    803197 8udv:B (2.348) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    803198 8udv:C (2.348) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    803199 8uee:F (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    803200 8uee:F (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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