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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798401 8t4o:A (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798402 8t4o:A (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798403 8t4o:B (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    798404 8t4o:B (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798405 8t4o:B (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798406 8t4p:A (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798407 8t4p:A (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    798408 8t4p:A (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798409 8t4p:B (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798410 8t4p:B (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    798411 8t4p:B (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    798412 8t4r:A (1.2) BS01 peptide ? GO:0003677 ... P55895 38266163
    798413 8t4r:A (1.2) BS02 ZN ? GO:0003677 ... P55895 38266163
    798414 8t4r:A (1.2) BS03 ZN ? GO:0003677 ... P55895 38266163
    798415 8t4s:A (2.6) BS01 rna ? GO:0000028 ... P08865 37733586
    798416 8t4s:B (2.6) BS01 rna ? GO:0002181 ... P61247 37733586
    798417 8t4s:C (2.6) BS01 rna ? GO:0002181 ... P15880 37733586
    798418 8t4s:C (2.6) BS02 peptide ? GO:0002181 ... P15880 37733586
    798419 8t4s:D (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37733586
    798420 8t4s:D (2.6) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 37733586
    798421 8t4s:E (2.6) BS01 rna ? GO:0002181 ... P62701 37733586
    798422 8t4s:F (2.6) BS01 rna ? GO:0000028 ... P46782 37733586
    798423 8t4s:G (2.6) BS01 rna ? GO:0000082 ... P62753 37733586
    798424 8t4s:H (2.6) BS01 rna ? GO:0001843 ... P62081 37733586
    798425 8t4s:I (2.6) BS01 rna ? GO:0000462 ... P62241 37733586
    798426 8t4s:J (2.6) BS01 rna ? GO:0002181 ... P46781 37733586
    798427 8t4s:K (2.6) BS01 rna ? GO:0002181 ... P46783 37733586
    798428 8t4s:L (2.6) BS01 rna ? GO:0002181 ... P62280 37733586
    798429 8t4s:M (2.6) BS01 rna ? GO:0002181 ... P25398 37733586
    798430 8t4s:N (2.6) BS01 rna ? GO:0002181 ... P62277 37733586
    798431 8t4s:O (2.6) BS01 rna ? GO:0000028 ... P62263 37733586
    798432 8t4s:P (2.6) BS01 rna ? GO:0000028 ... P62841 37733586
    798433 8t4s:Q (2.6) BS01 rna ? GO:0000462 ... P62249 37733586
    798434 8t4s:R (2.6) BS01 rna ? GO:0002181 ... P08708 37733586
    798435 8t4s:S (2.6) BS01 rna ? GO:0002181 ... P62269 37733586
    798436 8t4s:T (2.6) BS01 rna ? GO:0000028 ... P39019 37733586
    798437 8t4s:U (2.6) BS01 rna ? GO:0002181 ... P60866 37733586
    798438 8t4s:W (2.6) BS01 rna ? GO:0002181 ... P62244 37733586
    798439 8t4s:X (2.6) BS01 rna ? GO:0002181 ... P62266 37733586
    798440 8t4s:Y (2.6) BS01 rna ? GO:0002181 ... P62847 37733586
    798441 8t4s:Z (2.6) BS01 rna ? GO:0002181 ... P62851 37733586
    798442 8t4s:a (2.6) BS01 rna ? GO:0002181 ... P62854 37733586
    798443 8t4s:a (2.6) BS02 ZN ? GO:0002181 ... P62854 37733586
    798444 8t4s:b (2.6) BS01 rna ? GO:0000028 ... P42677 37733586
    798445 8t4s:c (2.6) BS01 rna ? GO:0000028 ... P62857 37733586
    798446 8t4s:d (2.6) BS01 rna ? GO:0002181 ... P62273 37733586
    798447 8t4s:d (2.6) BS02 ZN ? GO:0002181 ... P62273 37733586
    798448 8t4s:e (2.6) BS01 rna ? GO:0002181 ... P62861 37733586
    798449 8t4s:f (2.6) BS01 rna ? GO:0002181 ... P62979 37733586
    798450 8t4s:f (2.6) BS02 ZN ? GO:0002181 ... P62979 37733586
    798451 8t4s:g (2.6) BS01 rna ? GO:0001891 ... P63244 37733586
    798452 8t4v:A (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    798453 8t4v:A (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    798454 8t4v:B (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    798455 8t4v:B (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    798456 8t4y:A (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798457 8t4y:B (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798458 8t4y:C (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798459 8t4y:D (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798460 8t50:A (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798461 8t50:B (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798462 8t50:C (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798463 8t50:D (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    798464 8t55:A (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    798465 8t55:B (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    798466 8t55:C (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    798467 8t56:A (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    798468 8t56:A (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    798469 8t56:A (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    798470 8t56:A (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    798471 8t56:A (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    798472 8t56:B (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    798473 8t56:B (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    798474 8t56:B (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    798475 8t56:B (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    798476 8t56:B (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    798477 8t57:A (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    798478 8t57:A (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    798479 8t57:B (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    798480 8t57:B (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    798481 8t5g:A (1.92) BS01 THA ? GO:0005085 ... Q07890 38156904
    798482 8t5i:A (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    798483 8t5i:B (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    798484 8t5k:B (1.95) BS01 YGI ? GO:0002218 ... Q86WV6 37425806
    798485 8t5l:B (2.01) BS01 1SY ? GO:0002218 ... Q86WV6 37425806
    798486 8t5m:A (1.79) BS01 YIF ? GO:0005085 ... Q07890 38156904
    798487 8t5n:A (1.65) BS01 CA 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    798488 8t5n:A (1.65) BS02 AMP 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    798489 8t5p:A (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    798490 8t5p:B (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    798491 8t5p:D (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    798492 8t5q:A (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    798493 8t5q:B (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    798494 8t5q:D (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    798495 8t5r:A (2.12) BS01 6LH ? GO:0005085 ... Q07890 38156904
    798496 8t5s:A (2.9) BS01 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    798497 8t5s:A (2.9) BS02 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    798498 8t5s:A (2.9) BS03 ZN 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    798499 8t5s:A (2.9) BS04 ADP 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    798500 8t5u:A (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    798501 8t5u:A (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    798502 8t5u:B (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    798503 8t5u:B (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    798504 8t5u:C (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    798505 8t5u:C (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    798506 8t5u:D (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    798507 8t5u:D (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    798508 8t5u:E (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    798509 8t5u:E (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    798510 8t5u:F (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    798511 8t5u:F (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    798512 8t5u:G (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    798513 8t5u:G (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    798514 8t5y:A (1.44) BS01 CMP N/A GO:0003677 ... N/A 37945601
    798515 8t5z:A (2.03) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798516 8t5z:A (2.03) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798517 8t67:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798518 8t67:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798519 8t69:A (2.89) BS01 YHL ? GO:0001975 ... Q05940 37914936
    798520 8t6a:A (3.17) BS01 YHR ? GO:0001975 ... Q05940 37914936
    798521 8t6b:A (3.72) BS01 SRO ? GO:0001975 ... Q05940 37914936
    798522 8t6d:A (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    798523 8t6d:B (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    798524 8t6f:A (1.56) BS01 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    798525 8t6f:A (1.56) BS02 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    798526 8t6f:A (1.56) BS03 YI7 N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    798527 8t6g:A (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    798528 8t6g:B (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    798529 8t6j:A (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    798530 8t6j:B (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    798531 8t6l:A (3.3) BS01 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    798532 8t6l:A (3.3) BS02 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    798533 8t6l:A (3.3) BS03 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    798534 8t6l:A (3.3) BS04 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    798535 8t6l:A (3.3) BS05 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    798536 8t6l:A (3.3) BS06 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    798537 8t6l:A (3.3) BS07 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    798538 8t6l:A (3.3) BS08 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798539 8t6l:A (3.3) BS09 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798540 8t6l:A (3.3) BS10 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798541 8t6l:A (3.3) BS11 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798542 8t6l:A (3.3) BS12 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798543 8t6l:A (3.3) BS13 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798544 8t6l:A (3.3) BS14 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798545 8t6l:A (3.3) BS15 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    798546 8t6l:A (3.3) BS16 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    798547 8t6l:A (3.3) BS17 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    798548 8t6l:A (3.3) BS18 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    798549 8t6l:A (3.3) BS19 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    798550 8t6o:A (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798551 8t6o:A (3.1) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798552 8t6o:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798553 8t6p:A (3.15) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798554 8t6p:A (3.15) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798555 8t6p:A (3.15) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798556 8t6s:A (3.28) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798557 8t6s:A (3.28) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798558 8t6s:A (3.28) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798559 8t6t:A (3.04) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798560 8t6t:A (3.04) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798561 8t6t:A (3.04) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798562 8t6u:A (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    798563 8t6u:A (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    798564 8t6u:A (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    798565 8t6u:B (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    798566 8t6u:B (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    798567 8t6u:B (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    798568 8t6v:A (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    798569 8t6v:A (2.95) BS02 Y01 ? GO:0005452 ... P02730 37679563
    798570 8t6v:A (2.95) BS03 CLR ? GO:0005452 ... P02730 37679563
    798571 8t6v:B (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    798572 8t6v:B (2.95) BS02 CLR ? GO:0005452 ... P02730 37679563
    798573 8t6x:A (3.08) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798574 8t6x:A (3.08) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798575 8t6x:A (3.08) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798576 8t6x:A (3.08) BS04 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798577 8t6x:A (3.08) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798578 8t6y:A (2.88) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798579 8t6y:A (2.88) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798580 8t6y:A (2.88) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798581 8t6z:A (1.91) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798582 8t6z:A (1.91) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798583 8t6z:A (1.91) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798584 8t70:A (1.892) BS01 peptide 2.5.1.58
    2.5.1.59    		 GO:0004659 ... J9VSJ6 N/A
    798585 8t70:B (1.892) BS01 peptide 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    798586 8t70:B (1.892) BS02 ZN 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    798587 8t70:B (1.892) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    798588 8t70:B (1.892) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    798589 8t70:B (1.892) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    798590 8t70:B (1.892) BS06 FII 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    798591 8t70:B (1.892) BS07 BT6 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    798592 8t71:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    798593 8t71:B (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    798594 8t72:A (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798595 8t72:A (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    798596 8t72:B (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798597 8t72:B (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    798598 8t72:C (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798599 8t73:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    798600 8t73:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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