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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798201 8t1e:D (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798202 8t1e:D (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798203 8t1e:D (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798204 8t1e:D (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798205 8t1e:D (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798206 8t1f:A (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    798207 8t1f:B (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    798208 8t1f:C (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    798209 8t1f:D (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    798210 8t1j:A (2.7) BS01 ZN 1.14.13.39 GO:0001666 ... P29476 37979917
    798211 8t1j:A (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    798212 8t1j:A (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    798213 8t1j:A (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    798214 8t1j:B (2.7) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    798215 8t1j:B (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    798216 8t1j:B (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    798217 8t1j:B (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    798218 8t1k:A (3.14) BS01 ZN 1.14.13.39 GO:0001666 ... P29476 37979917
    798219 8t1k:A (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    798220 8t1k:A (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    798221 8t1k:A (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    798222 8t1k:A (3.14) BS05 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    798223 8t1k:B (3.14) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    798224 8t1k:B (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    798225 8t1k:B (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    798226 8t1k:B (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    798227 8t1l:C (4.83) BS01 peptide N/A GO:0000151 ... Q921D4 N/A
    798228 8t1o:A (3.3) BS01 PIO ? GO:0005794 ... P17427 37364761
    798229 8t1o:M (3.3) BS01 peptide ? GO:0002092 ... P84091 37364761
    798230 8t1p:C (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    798231 8t1p:C (2.96) BS02 MG 7.6.2.- GO:0005524 ... O07550 37938578
    798232 8t1p:C (2.96) BS03 AOV 7.6.2.- GO:0005524 ... O07550 37938578
    798233 8t1p:D (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    798234 8t1p:D (2.96) BS02 AOV 7.6.2.- GO:0005524 ... O07549 37938578
    798235 8t1p:D (2.96) BS03 MG 7.6.2.- GO:0005524 ... O07549 37938578
    798236 8t1s:A (2.0) BS01 SAH ? GO:0008168 ... Q8EGW3 37799586
    798237 8t1s:A (2.0) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    798238 8t1s:C (2.0) BS01 ZN ? GO:0008168 ... Q8EGW3 37799586
    798239 8t1s:C (2.0) BS02 SAH ? GO:0008168 ... Q8EGW3 37799586
    798240 8t1t:A (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    798241 8t1t:A (1.55) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    798242 8t1t:C (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    798243 8t1t:C (1.55) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    798244 8t1u:A (2.91) BS01 dna 2.1.1.37 GO:0008168 ... Q9M548 37926286
    798245 8t1u:A (2.91) BS02 dna 2.1.1.37 GO:0008168 ... Q9M548 37926286
    798246 8t1u:A (2.91) BS03 SAH 2.1.1.37 GO:0008168 ... Q9M548 37926286
    798247 8t1y:A (2.14) BS01 DAN 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798248 8t1z:A (1.93) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798249 8t24:A (2.29) BS01 FUD 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798250 8t26:A (1.42) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798251 8t27:A (1.41) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798252 8t27:A (1.41) BS02 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798253 8t27:A (1.41) BS03 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798254 8t27:A (1.41) BS04 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    798255 8t2h:A (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    798256 8t2h:B (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    798257 8t2n:A (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    798258 8t2n:C (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    798259 8t2r:D (3.1) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    798260 8t2r:D (3.1) BS02 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    798261 8t2s:D (3.0) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    798262 8t2t:D (3.0) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    798263 8t2t:D (3.0) BS02 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    798264 8t2u:A (3.1) BS01 peptide ? GO:0001525 ... P08514 37443315
    798265 8t2u:A (3.1) BS02 CA ? GO:0001525 ... P08514 37443315
    798266 8t2u:A (3.1) BS03 CA ? GO:0001525 ... P08514 37443315
    798267 8t2u:A (3.1) BS04 CA ? GO:0001525 ... P08514 37443315
    798268 8t2u:A (3.1) BS05 CA ? GO:0001525 ... P08514 37443315
    798269 8t2u:B (3.1) BS01 peptide ? GO:0001618 ... P05106 37443315
    798270 8t2u:B (3.1) BS02 MG ? GO:0001618 ... P05106 37443315
    798271 8t2u:B (3.1) BS03 CA ? GO:0001618 ... P05106 37443315
    798272 8t2u:B (3.1) BS04 CA ? GO:0001618 ... P05106 37443315
    798273 8t2v:A (3.4) BS01 CA ? GO:0001525 ... P08514 37443315
    798274 8t2v:A (3.4) BS02 CA ? GO:0001525 ... P08514 37443315
    798275 8t2v:A (3.4) BS03 CA ? GO:0001525 ... P08514 37443315
    798276 8t2v:A (3.4) BS04 CA ? GO:0001525 ... P08514 37443315
    798277 8t2v:A (3.4) BS05 CA ? GO:0001525 ... P08514 37443315
    798278 8t2v:B (3.4) BS01 MG ? GO:0001618 ... P05106 37443315
    798279 8t2v:B (3.4) BS02 CA ? GO:0001618 ... P05106 37443315
    798280 8t2v:B (3.4) BS03 CA ? GO:0001618 ... P05106 37443315
    798281 8t31:A (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    798282 8t31:C (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    798283 8t31:E (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    798284 8t31:G (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    798285 8t31:I (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    798286 8t32:A (2.051) BS01 peptide ? GO:0000045 ... O95166 38726830
    798287 8t33:A (1.599) BS01 peptide ? GO:0000045 ... O95166 38726830
    798288 8t33:A (1.599) BS02 ZN ? GO:0000045 ... O95166 38726830
    798289 8t3k:C (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    798290 8t3k:D (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    798291 8t3l:A (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    798292 8t3l:B (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    798293 8t3l:C (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    798294 8t3l:D (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    798295 8t3m:A (3.5) BS01 85R ? GO:0005216 ... O35433 38698206
    798296 8t3m:B (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    798297 8t3m:C (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    798298 8t3m:C (3.5) BS02 NKN ? GO:0005216 ... O35433 38698206
    798299 8t3m:D (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    798300 8t3o:R (3.06) BS01 YN9 ? GO:0004930 ... Q5NUL3 38198545
    798301 8t3o:R (3.06) BS02 2Y5 ? GO:0004930 ... Q5NUL3 38198545
    798302 8t3p:A (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    798303 8t3p:B (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    798304 8t3q:R (3.14) BS01 HXA ? GO:0004930 ... Q5NUL3 38198545
    798305 8t3r:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    798306 8t3r:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    798307 8t3r:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    798308 8t3s:R (3.07) BS01 BUA ? GO:0004930 ... O15552 38198545
    798309 8t3s:R (3.07) BS02 CLR ? GO:0004930 ... O15552 38198545
    798310 8t3t:A (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    798311 8t3t:C (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    798312 8t3t:D (3.21) BS01 dna ? GO:0000786 ... P02281 37872231
    798313 8t3t:E (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    798314 8t3t:E (3.21) BS02 dna ? GO:0000786 ... P84233 37872231
    798315 8t3t:F (3.21) BS01 dna ? GO:0000786 ... P62799 37872231
    798316 8t3t:G (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    798317 8t3t:G (3.21) BS02 dna ? GO:0000786 ... P06897 37872231
    798318 8t3t:K (3.21) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798319 8t3t:K (3.21) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798320 8t3t:L (3.21) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798321 8t3t:L (3.21) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798322 8t3u:A (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    798323 8t3u:A (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    798324 8t3u:B (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    798325 8t3u:B (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    798326 8t3v:R (3.39) BS01 HXA ? GO:0004930 ... O14842 38198545
    798327 8t3w:A (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    798328 8t3w:A (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    798329 8t3w:B (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    798330 8t3w:B (3.25) BS02 dna ? GO:0000786 ... P62799 37872231
    798331 8t3w:C (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    798332 8t3w:C (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    798333 8t3w:D (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    798334 8t3w:E (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    798335 8t3w:E (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    798336 8t3w:F (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    798337 8t3w:G (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    798338 8t3w:G (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    798339 8t3w:H (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    798340 8t3w:K (3.25) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798341 8t3w:K (3.25) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798342 8t3w:L (3.25) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798343 8t3w:L (3.25) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798344 8t3y:A (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    798345 8t3y:A (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    798346 8t3y:B (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    798347 8t3y:B (3.47) BS02 dna ? GO:0000786 ... P62799 37872231
    798348 8t3y:C (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    798349 8t3y:C (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    798350 8t3y:D (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    798351 8t3y:E (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    798352 8t3y:E (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    798353 8t3y:F (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    798354 8t3y:G (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    798355 8t3y:G (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    798356 8t3y:H (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    798357 8t3y:K (3.47) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798358 8t3y:K (3.47) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798359 8t3y:L (3.47) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798360 8t3y:L (3.47) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    798361 8t41:A (1.45) BS01 ZN 3.4.11.2 GO:0004177 ... L7N655 N/A
    798362 8t41:A (1.45) BS02 MG 3.4.11.2 GO:0004177 ... L7N655 N/A
    798363 8t42:A (3.6) BS01 peptide 3.6.5.- GO:0000226 ... P68363 38658656
    798364 8t42:A (3.6) BS02 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    798365 8t42:A (3.6) BS03 MG 3.6.5.- GO:0000226 ... P68363 38658656
    798366 8t42:A (3.6) BS04 G2P 3.6.5.- GO:0000226 ... P68363 38658656
    798367 8t42:B (3.6) BS01 peptide ? GO:0000226 ... P07437 38658656
    798368 8t42:B (3.6) BS02 G2P ? GO:0000226 ... P07437 38658656
    798369 8t42:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    798370 8t42:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    798371 8t42:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    798372 8t44:A (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    798373 8t44:A (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    798374 8t44:B (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    798375 8t44:B (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    798376 8t44:B (3.12) BS03 CO3 ? GO:0005452 ... P02730 N/A
    798377 8t45:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    798378 8t45:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    798379 8t45:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    798380 8t47:A (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    798381 8t47:A (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    798382 8t47:B (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    798383 8t47:B (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    798384 8t4e:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    798385 8t4e:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    798386 8t4f:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    798387 8t4f:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    798388 8t4g:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    798389 8t4g:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    798390 8t4h:A (3.8) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    798391 8t4h:B (3.8) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    798392 8t4i:A (5.1) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    798393 8t4i:B (5.1) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    798394 8t4j:A (3.9) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    798395 8t4j:B (3.9) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    798396 8t4m:A (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    798397 8t4m:B (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    798398 8t4m:C (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    798399 8t4m:D (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    798400 8t4o:A (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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