Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 3971 3972 3973 3974 3975 3976 3977 3978 3979 3980 3981 3982 3983 3984 3985 3986 3987 3988 3989 3990 3991 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    796001 8sn5:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    796002 8sn5:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    796003 8sn5:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    796004 8sn5:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    796005 8sn5:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    796006 8sn5:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    796007 8sn5:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    796008 8sn5:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    796009 8sn5:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    796010 8sn6:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    796011 8sn6:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    796012 8sn6:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    796013 8sn6:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    796014 8sn6:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    796015 8sn6:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    796016 8sn6:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    796017 8sn6:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    796018 8sn6:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    796019 8sn6:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    796020 8sn6:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    796021 8sn6:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    796022 8sn6:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    796023 8sn6:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    796024 8sn6:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    796025 8sn7:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    796026 8sn7:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    796027 8sn7:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    796028 8sn7:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    796029 8sn7:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    796030 8sn7:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    796031 8sn7:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    796032 8sn7:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    796033 8sn7:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    796034 8sn7:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    796035 8sn7:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    796036 8sn7:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    796037 8sn7:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    796038 8sn7:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    796039 8sn7:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    796040 8sn7:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    796041 8sn8:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    796042 8sn8:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    796043 8sn8:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    796044 8sn8:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    796045 8sn8:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    796046 8sn8:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    796047 8sn8:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    796048 8sn8:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    796049 8sn8:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    796050 8sn8:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    796051 8sn8:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    796052 8sn8:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    796053 8sn8:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    796054 8sn8:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    796055 8sn9:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    796056 8sn9:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    796057 8sn9:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    796058 8sn9:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    796059 8sn9:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    796060 8sn9:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    796061 8sn9:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    796062 8sn9:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    796063 8sn9:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    796064 8sn9:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    796065 8sn9:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    796066 8sn9:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    796067 8sn9:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    796068 8sn9:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    796069 8sn9:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    796070 8sn9:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    796071 8sna:A (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    796072 8sna:A (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    796073 8sna:B (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    796074 8sna:B (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    796075 8sna:C (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    796076 8sna:C (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    796077 8sna:D (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    796078 8sna:D (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    796079 8sna:E (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    796080 8sna:E (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    796081 8sna:F (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    796082 8sna:F (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    796083 8sna:G (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    796084 8sna:G (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    796085 8sna:H (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    796086 8sna:H (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    796087 8snb:1y (3.3) BS01 peptide ? GO:0005813 ... A0A7M7PGM9 37327785
    796088 8snb:2R (3.3) BS01 peptide ? GO:0005634 ... A0A7M7REB1 37327785
    796089 8snb:5F (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    796090 8snb:5G (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    796091 8snb:5H (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    796092 8snb:5J (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    796093 8snb:5N (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    796094 8snb:5N (3.3) BS02 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    796095 8snb:6M (3.3) BS01 peptide ? GO:0019902 ... A0A7M7P181 37327785
    796096 8snb:8F (3.3) BS01 peptide ? GO:0005929 ... Q9U0E3 37327785
    796097 8snb:8K (3.3) BS01 peptide ? GO:0005737 ... A0A7M7SXG5 37327785
    796098 8snb:8S (3.3) BS01 peptide ? GO:0005737 ... Q26623 37327785
    796099 8snb:AA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796100 8snb:AB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796101 8snb:AC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796102 8snb:AC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796103 8snb:AD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796104 8snb:AE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796105 8snb:AF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796106 8snb:AG (3.3) BS01 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796107 8snb:AG (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796108 8snb:AH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796109 8snb:AH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796110 8snb:AI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796111 8snb:AJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796112 8snb:AK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796113 8snb:AL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796114 8snb:AM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796115 8snb:BA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796116 8snb:BB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796117 8snb:BC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796118 8snb:BD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796119 8snb:BE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796120 8snb:BF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796121 8snb:BG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796122 8snb:BH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796123 8snb:BI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796124 8snb:BI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796125 8snb:BJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796126 8snb:BK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796127 8snb:BK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796128 8snb:BL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796129 8snb:BM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796130 8snb:CA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796131 8snb:CA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796132 8snb:CB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796133 8snb:CB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796134 8snb:CC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796135 8snb:CC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796136 8snb:CD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796137 8snb:CE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796138 8snb:CF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796139 8snb:CF (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796140 8snb:CG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796141 8snb:CH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796142 8snb:CI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796143 8snb:CI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796144 8snb:CJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796145 8snb:CK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796146 8snb:CL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796147 8snb:CM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796148 8snb:DA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796149 8snb:DB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796150 8snb:DB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796151 8snb:DC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796152 8snb:DD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796153 8snb:DD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796154 8snb:DE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796155 8snb:DF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796156 8snb:DG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796157 8snb:DH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796158 8snb:DH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796159 8snb:DI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796160 8snb:DJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796161 8snb:DJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796162 8snb:DK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796163 8snb:DL (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796164 8snb:DL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796165 8snb:DM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796166 8snb:EA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796167 8snb:EA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796168 8snb:EB (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796169 8snb:EB (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    796170 8snb:EC (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796171 8snb:ED (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796172 8snb:EE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796173 8snb:EF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796174 8snb:EG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796175 8snb:EH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796176 8snb:EI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796177 8snb:EJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796178 8snb:EK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796179 8snb:EL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796180 8snb:EM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796181 8snb:FA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796182 8snb:FB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796183 8snb:FC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796184 8snb:FD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796185 8snb:FE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796186 8snb:FF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796187 8snb:FG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796188 8snb:FG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796189 8snb:FH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796190 8snb:FI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796191 8snb:FI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796192 8snb:FJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796193 8snb:FK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796194 8snb:FL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796195 8snb:FM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796196 8snb:GA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796197 8snb:GA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    796198 8snb:GB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    796199 8snb:GC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    796200 8snb:GD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417