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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28001 1llu:C (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28002 1llu:C (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28003 1llu:D (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28004 1llu:D (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28005 1llu:D (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28006 1llu:D (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28007 1llu:E (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28008 1llu:E (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28009 1llu:E (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28010 1llu:E (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28011 1llu:E (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28012 1llu:F (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28013 1llu:F (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28014 1llu:F (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28015 1llu:F (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28016 1llu:G (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28017 1llu:G (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28018 1llu:G (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28019 1llu:G (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28020 1llu:G (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28021 1llu:H (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28022 1llu:H (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28023 1llu:H (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28024 1llu:H (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28025 1llw:A (2.7) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 11967268
    28026 1llw:A (2.7) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    28027 1llw:A (2.7) BS03 AKG 1.4.7.1 GO:0006537 ... P55038 11967268
    28028 1llz:A (3.0) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 11967268
    28029 1llz:A (3.0) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    28030 1lm1:A (2.8) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 11967268
    28031 1lm1:A (2.8) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    28032 1lm2:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 12119407
    28033 1lm2:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 12119407
    28034 1lm2:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 12119407
    28035 1lm3:B (2.7) BS01 MG ? GO:0005506 ... P0ABE7 11914078
    28036 1lm3:B (2.7) BS02 HEM ? GO:0005506 ... P0ABE7 11914078
    28037 1lm3:D (2.7) BS01 HEM ? GO:0005506 ... P0ABE7 11914078
    28038 1lm4:A (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    28039 1lm4:B (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    28040 1lm6:A (1.75) BS01 FE 3.5.1.88 GO:0006412 ... Q9F2F0 12823970
    28041 1lmb:3 (1.8) BS01 dna ? GO:0003677 ... P03034 1387915
    28042 1lmb:3 (1.8) BS02 dna ? GO:0003677 ... P03034 1387915
    28043 1lmb:4 (1.8) BS01 dna ? GO:0003677 ... P03034 1387915
    28044 1lmb:4 (1.8) BS02 dna ? GO:0003677 ... P03034 1387915
    28045 1lmc:A (2.0) BS01 BUL 3.2.1.17 GO:0003796 ... P11941 15299732
    28046 1lmh:A (1.9) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12048187
    28047 1lmj:A (-1.00) BS01 CA ? GO:0005509 ... P35555 12511552
    28048 1lmj:A (-1.00) BS02 CA ? GO:0005509 ... P35555 12511552
    28049 1lml:A (1.86) BS01 ZN 3.4.24.36 GO:0004222 ... P08148 9739094
    28050 1lms:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 12617658
    28051 1lmw:B (2.5) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 8591045
    28052 1lmw:B (2.5) BS02 0GJ 3.4.21.73 GO:0004252 ... P00749 8591045
    28053 1lmw:D (2.5) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 8591045
    28054 1lmw:D (2.5) BS02 0GJ 3.4.21.73 GO:0004252 ... P00749 8591045
    28055 1ln1:A (2.4) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    28056 1ln2:A (2.9) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    28057 1ln2:B (2.9) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    28058 1ln3:A (2.9) BS01 CPL ? GO:0005515 ... Q9UKL6 12055623
    28059 1ln3:B (2.9) BS01 CPL ? GO:0005515 ... Q9UKL6 12055623
    28060 1ln6:A (-1.00) BS01 RET ? GO:0000139 ... P02699 12044163
    28061 1ln8:A (1.65) BS01 CA 3.1.1.4 GO:0004623 ... P60045 N/A
    28062 1lna:E (1.9) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    28063 1lna:E (1.9) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    28064 1lna:E (1.9) BS03 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    28065 1lna:E (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28066 1lna:E (1.9) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28067 1lna:E (1.9) BS06 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    28068 1lna:E (1.9) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28069 1lnb:E (1.8) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    28070 1lnb:E (1.8) BS02 FE 3.4.24.27 GO:0004222 ... P00800 8535232
    28071 1lnb:E (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28072 1lnb:E (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28073 1lnb:E (1.8) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28074 1lnb:E (1.8) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28075 1lnc:E (1.8) BS01 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    28076 1lnc:E (1.8) BS02 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    28077 1lnc:E (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28078 1lnc:E (1.8) BS04 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    28079 1lnc:E (1.8) BS05 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    28080 1lnc:E (1.8) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28081 1lnd:E (1.7) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    28082 1lnd:E (1.7) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    28083 1lnd:E (1.7) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    28084 1lnd:E (1.7) BS04 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    28085 1lnd:E (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28086 1lnd:E (1.7) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28087 1lnd:E (1.7) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28088 1lnd:E (1.7) BS08 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28089 1lne:E (1.7) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    28090 1lne:E (1.7) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    28091 1lne:E (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28092 1lne:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28093 1lnf:E (1.7) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    28094 1lnf:E (1.7) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    28095 1lnf:E (1.7) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    28096 1lnf:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28097 1lnf:E (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28098 1lnf:E (1.7) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28099 1lnf:E (1.7) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    28100 1lng:A (2.3) BS01 rna ? GO:0003723 ... Q58440 12050674
    28101 1lnh:A (2.6) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 9294864
    28102 1lnl:A (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    28103 1lnl:A (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    28104 1lnl:B (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    28105 1lnl:B (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    28106 1lnl:B (3.3) BS03 CU ? GO:0005344 ... P83040 12767214
    28107 1lnl:C (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    28108 1lnl:C (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    28109 1lnl:C (3.3) BS03 CU ? GO:0005344 ... P83040 12767214
    28110 1lnm:A (1.9) BS01 DTX ? GO:0000302 ... P09464 12823976 MOAD: Kd=2nM
    PDBbind: -logKd/Ki=8.70, Kd=2.0nM
    28111 1lnq:A (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28112 1lnq:B (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28113 1lnq:C (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28114 1lnq:D (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28115 1lnq:E (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28116 1lnq:F (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28117 1lnq:G (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28118 1lnq:H (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    28119 1lnx:A (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    28120 1lnx:B (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    28121 1lnx:C (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    28122 1lnx:D (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    28123 1lnx:E (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    28124 1lnx:E (2.05) BS02 URI ? GO:0000398 ... Q8ZYG5 12649441
    28125 1lnx:F (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    28126 1lnx:G (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    28127 1lny:A (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    28128 1lny:A (2.2) BS02 IMO 6.3.4.4 GO:0000166 ... P28650 12004071
    28129 1lny:A (2.2) BS03 GDP 6.3.4.4 GO:0000166 ... P28650 12004071
    28130 1lny:B (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    28131 1lny:B (2.2) BS02 GDP 6.3.4.4 GO:0000166 ... P28650 12004071
    28132 1lny:B (2.2) BS03 IMO 6.3.4.4 GO:0000166 ... P28650 12004071
    28133 1lnz:A (2.6) BS01 MG 3.6.5.- GO:0000287 ... P20964 12429099
    28134 1lnz:B (2.6) BS01 G4P 3.6.5.- GO:0000287 ... P20964 12429099
    28135 1lo1:A (-1.00) BS01 dna ? GO:0003700 ... O95718 12654265 PDBbind: Kd=7.1nM
    28136 1lo1:A (-1.00) BS02 dna ? GO:0003700 ... O95718 12654265 PDBbind: Kd=7.1nM
    28137 1lo1:A (-1.00) BS03 ZN ? GO:0003700 ... O95718 12654265
    28138 1lo1:A (-1.00) BS04 ZN ? GO:0003700 ... O95718 12654265
    28139 1lo3:L (2.3) BS01 AN1 ? GO:0046872 ... Q65ZC0 12093912
    28140 1lo3:X (2.3) BS01 AN1 ? GO:0046872 ... Q65ZC0 12093912
    28141 1lo5:A (3.2) BS01 peptide ? GO:0006955 ... P01903 12467569
    28142 1lo5:B (3.2) BS01 peptide ? GO:0006955 ... P01911 12467569
    28143 1lo7:A (1.5) BS01 4CO 3.1.2.23 GO:0016787 ... P56653 11997398 MOAD: Kd=0.33uM
    28144 1lo8:A (1.8) BS01 4CA 3.1.2.23 GO:0016787 ... P56653 11997398 MOAD: Ki=0.26uM
    28145 1lo9:A (2.8) BS01 BCA 3.1.2.23 GO:0016787 ... P56653 11997398
    28146 1loa:A (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    28147 1loa:A (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    28148 1loa:A (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    28149 1loa:B (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    28150 1loa:C (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    28151 1loa:C (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    28152 1loa:C (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    28153 1loa:D (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    28154 1loa:E (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    28155 1loa:E (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    28156 1loa:F (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    28157 1loa:G (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    28158 1loa:G (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    28159 1loa:G (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    28160 1loa:H (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    28161 1lob:A (2.0) BS01 CA ? GO:0005515 ... P04122 2091026
    28162 1lob:A (2.0) BS02 MN ? GO:0005515 ... P04122 2091026
    28163 1lob:A (2.0) BS03 MMA ? GO:0005515 ... P04122 2091026
    28164 1lob:B (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    28165 1lob:C (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    28166 1lob:C (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    28167 1lob:C (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    28168 1lob:D (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    28169 1lob:E (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    28170 1lob:E (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    28171 1lob:E (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    28172 1lob:F (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    28173 1lob:G (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    28174 1lob:G (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    28175 1lob:G (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    28176 1lob:H (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    28177 1loc:A (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    28178 1loc:A (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    28179 1loc:A (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    28180 1loc:B (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    28181 1loc:C (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    28182 1loc:C (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    28183 1loc:C (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    28184 1loc:D (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    28185 1loc:E (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    28186 1loc:E (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    28187 1loc:E (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    28188 1loc:F (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    28189 1loc:G (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    28190 1loc:G (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    28191 1loc:G (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    28192 1loc:H (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    28193 1lod:A (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    28194 1lod:A (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    28195 1lod:A (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    28196 1lod:B (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    28197 1lod:C (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    28198 1lod:C (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    28199 1lod:C (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    28200 1lod:D (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417