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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27401 1lby:B (2.25) BS01 F6P 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27402 1lby:B (2.25) BS02 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27403 1lby:B (2.25) BS03 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27404 1lby:B (2.25) BS04 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27405 1lby:B (2.25) BS05 PO4 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27406 1lbz:A (2.2) BS01 FBP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27407 1lbz:A (2.2) BS02 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27408 1lbz:A (2.2) BS03 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27409 1lbz:A (2.2) BS04 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27410 1lbz:A (2.2) BS05 FBP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27411 1lbz:B (2.2) BS01 FBP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27412 1lbz:B (2.2) BS02 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27413 1lbz:B (2.2) BS03 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27414 1lbz:B (2.2) BS04 CA 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    27415 1lc0:A (1.2) BS01 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    27416 1lc0:A (1.2) BS02 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    27417 1lc1:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    27418 1lc2:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    27419 1lc3:A (1.5) BS01 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    27420 1lc3:A (1.5) BS02 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    27421 1lc3:A (1.5) BS03 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    27422 1lc3:A (1.5) BS04 NAD 1.3.1.24 GO:0000166 ... P46844 12079357
    27423 1lc3:A (1.5) BS05 NAD 1.3.1.24 GO:0000166 ... P46844 12079357
    27424 1lc5:A (1.46) BS01 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    27425 1lc5:A (1.46) BS02 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    27426 1lc7:A (1.8) BS01 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    27427 1lc7:A (1.8) BS02 TPO 4.1.1.81 GO:0003824 ... P97084 12119022
    27428 1lc8:A (1.8) BS01 33P 4.1.1.81 GO:0003824 ... P97084 12119022
    27429 1lca:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    27430 1lcb:A (2.5) BS01 TMP 2.1.1.45 GO:0004799 ... P00469 8371269
    27431 1lcb:A (2.5) BS02 DHF 2.1.1.45 GO:0004799 ... P00469 8371269
    27432 1lcc:A (-1.00) BS01 dna ? GO:0003677 ... P03023 8230225
    27433 1lcc:A (-1.00) BS02 dna ? GO:0003677 ... P03023 8230225
    27434 1lcd:A (-1.00) BS01 dna ? GO:0003677 ... P03023 8230225
    27435 1lcd:A (-1.00) BS02 dna ? GO:0003677 ... P03023 8230225
    27436 1lce:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    27437 1lce:A (2.5) BS02 TMF 2.1.1.45 GO:0004799 ... P00469 8371269
    27438 1lcf:A (2.0) BS01 CU 3.4.21.- GO:0001503 ... P02788 15299444
    27439 1lcf:A (2.0) BS02 CU 3.4.21.- GO:0001503 ... P02788 15299444
    27440 1lcf:A (2.0) BS03 CO3 3.4.21.- GO:0001503 ... P02788 15299444
    27441 1lcf:A (2.0) BS04 OXL 3.4.21.- GO:0001503 ... P02788 15299444
    27442 1lcn:A (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    27443 1lcn:B (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    27444 1lcn:B (1.63) BS02 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    27445 1lco:A (2.9) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    27446 1lco:A (2.9) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    27447 1lco:A (2.9) BS03 PPY 1.1.2.3 GO:0016491 ... P00175 7632684
    27448 1lco:B (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    27449 1lco:B (2.9) BS02 PPY 1.1.2.3 GO:0016491 ... P00175 7632684
    27450 1lcp:A (1.65) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821
    27451 1lcp:A (1.65) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821
    27452 1lcp:A (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    PDBbind: -logKd/Ki=6.64, Ki=0.23uM
    27453 1lcp:B (1.65) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821
    27454 1lcp:B (1.65) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821
    27455 1lcp:B (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    27456 1lct:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 8371268
    27457 1lct:A (2.0) BS02 CO3 3.4.21.- GO:0005576 ... P02788 8371268
    27458 1lcu:A (3.5) BS01 CA 3.6.4.- GO:0000287 ... P68135 11932258
    27459 1lcu:A (3.5) BS02 CA 3.6.4.- GO:0000287 ... P68135 11932258
    27460 1lcu:A (3.5) BS03 ATP 3.6.4.- GO:0000287 ... P68135 11932258
    27461 1lcu:A (3.5) BS04 LAR 3.6.4.- GO:0000287 ... P68135 11932258
    27462 1lcu:B (3.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 11932258
    27463 1lcu:B (3.5) BS02 LAR 3.6.4.- GO:0000287 ... P68135 11932258
    27464 1lcv:A (2.3) BS01 SNR ? GO:0009374 ... P22629 12055191
    27465 1lcv:B (2.3) BS01 SNR ? GO:0009374 ... P22629 12055191
    27466 1lcw:A (2.2) BS01 SHM ? GO:0009374 ... P22629 12055191
    27467 1lcw:B (2.2) BS01 SHM ? GO:0009374 ... P22629 12055191
    27468 1lcz:A (1.95) BS01 BH7 ? GO:0009374 ... P22629 12055191
    27469 1lcz:B (1.95) BS01 BH7 ? GO:0009374 ... P22629 12055191
    27470 1ld3:A (2.6) BS01 ZN 4.99.1.9 GO:0004325 ... P32396 12761666
    27471 1ld7:A (2.0) BS01 GLC 2.5.1.58
    2.5.1.59    		 GO:0004659 ... P49354 12036349
    27472 1ld7:A (2.0) BS02 FPP 2.5.1.58
    2.5.1.59    		 GO:0004659 ... P49354 12036349 BindingDB: Kd=2.0nM
    27473 1ld7:B (2.0) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 12036349
    27474 1ld7:B (2.0) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    27475 1ld7:B (2.0) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12036349
    27476 1ld7:B (2.0) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 12036349
    27477 1ld7:B (2.0) BS05 U66 2.5.1.58 GO:0003824 ... P49356 12036349 MOAD: ic50=1.1nM
    PDBbind: -logKd/Ki=8.96, IC50=1.1nM
    27478 1ld8:A (1.8) BS01 GLC 2.5.1.58
    2.5.1.59    		 GO:0004659 ... P49354 12036349
    27479 1ld8:B (1.8) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 12036349
    27480 1ld8:B (1.8) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    27481 1ld8:B (1.8) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12036349
    27482 1ld8:B (1.8) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 12036349
    27483 1ld8:B (1.8) BS05 U49 2.5.1.58 GO:0003824 ... P49356 12036349 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    27484 1ldb:A (2.8) BS01 SO4 1.1.1.27 GO:0003824 ... P00344 2330370
    27485 1ldc:A (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    27486 1ldc:A (2.9) BS02 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    27487 1ldc:A (2.9) BS03 PYR 1.1.2.3 GO:0016491 ... P00175 7632684
    27488 1ldc:B (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    27489 1ldc:B (2.9) BS02 PYR 1.1.2.3 GO:0016491 ... P00175 7632684
    27490 1lde:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27491 1lde:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27492 1lde:A (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27493 1lde:A (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    27494 1lde:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27495 1lde:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27496 1lde:B (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27497 1lde:B (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    27498 1lde:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27499 1lde:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27500 1lde:C (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27501 1lde:C (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    27502 1lde:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27503 1lde:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27504 1lde:D (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27505 1lde:D (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    27506 1ldg:A (1.74) BS01 NAI 1.1.1.27 GO:0003824 ... Q27743 8901865
    27507 1ldj:B (3.0) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 11961546
    27508 1ldj:B (3.0) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 11961546
    27509 1ldj:B (3.0) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 11961546
    27510 1ldk:C (3.1) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 11961546
    27511 1ldk:C (3.1) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 11961546
    27512 1ldk:C (3.1) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 11961546
    27513 1ldm:A (2.1) BS01 NAD 1.1.1.27 GO:0003824 ... P00341 3430615
    27514 1ldn:A (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    27515 1ldn:A (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27516 1ldn:B (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    27517 1ldn:B (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27518 1ldn:C (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    27519 1ldn:C (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27520 1ldn:D (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    27521 1ldn:D (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27522 1ldn:E (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    27523 1ldn:E (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27524 1ldn:F (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    27525 1ldn:F (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27526 1ldn:G (2.5) BS01 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27527 1ldn:H (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    27528 1ldn:H (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    27529 1ldo:A (2.2) BS01 SNR ? GO:0005576 ... P02701 12055191
    27530 1ldo:B (2.2) BS01 SNR ? GO:0005576 ... P02701 12055191
    27531 1ldq:A (2.7) BS01 SHM ? GO:0005576 ... P02701 12055191
    27532 1ldq:B (2.7) BS01 SHM ? GO:0005576 ... P02701 12055191
    27533 1ldt:T (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9242660
    27534 1ldy:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27535 1ldy:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27536 1ldy:A (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27537 1ldy:A (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    27538 1ldy:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27539 1ldy:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27540 1ldy:B (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27541 1ldy:B (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    27542 1ldy:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27543 1ldy:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27544 1ldy:C (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27545 1ldy:C (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    27546 1ldy:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27547 1ldy:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    27548 1ldy:D (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    27549 1ldy:D (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    27550 1le5:A (2.75) BS01 dna ? GO:0003677 ... Q04207 11970948
    27551 1le5:A (2.75) BS02 dna ? GO:0003677 ... Q04207 11970948
    27552 1le5:B (2.75) BS01 dna ? GO:0003677 ... P25799 11970948
    27553 1le5:B (2.75) BS02 dna ? GO:0003677 ... P25799 11970948
    27554 1le5:E (2.75) BS01 dna ? GO:0003677 ... Q04207 11970948
    27555 1le5:E (2.75) BS02 dna ? GO:0003677 ... Q04207 11970948
    27556 1le5:F (2.75) BS01 dna ? GO:0003677 ... P25799 11970948
    27557 1le5:F (2.75) BS02 dna ? GO:0003677 ... P25799 11970948
    27558 1le6:A (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    27559 1le6:B (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    27560 1le6:C (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    27561 1le7:A (2.09) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    27562 1le7:B (2.09) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    27563 1le8:A (2.3) BS01 dna ? GO:0000981 ... P0CY10 12121651 PDBbind: Kd=4.51uM
    27564 1le8:A (2.3) BS02 dna ? GO:0000981 ... P0CY10 12121651 PDBbind: Kd=4.51uM
    27565 1le8:B (2.3) BS01 dna ? GO:0003677 ... P0CY08 12121651 PDBbind: Kd=4.51uM
    27566 1le8:B (2.3) BS02 dna ? GO:0003677 ... P0CY08 12121651 PDBbind: Kd=4.51uM
    27567 1le9:A (3.0) BS01 dna ? GO:0003677 ... Q04207 11970948
    27568 1le9:A (3.0) BS02 dna ? GO:0003677 ... Q04207 11970948
    27569 1le9:B (3.0) BS01 dna ? GO:0003677 ... P25799 11970948
    27570 1le9:B (3.0) BS02 dna ? GO:0003677 ... P25799 11970948
    27571 1le9:E (3.0) BS01 dna ? GO:0003677 ... Q04207 11970948
    27572 1le9:E (3.0) BS02 dna ? GO:0003677 ... Q04207 11970948
    27573 1le9:F (3.0) BS01 dna ? GO:0003677 ... P25799 11970948
    27574 1le9:F (3.0) BS02 dna ? GO:0003677 ... P25799 11970948
    27575 1lec:A (2.0) BS01 MN ? GO:0030246 ... P24146 8478943
    27576 1lec:A (2.0) BS02 CA ? GO:0030246 ... P24146 8478943
    27577 1lec:A (2.0) BS03 SO4 ? GO:0030246 ... P24146 8478943
    27578 1led:A (2.0) BS01 GAL ? GO:0030246 ... P24146 8478943
    27579 1led:A (2.0) BS02 FUC ? GO:0030246 ... P24146 8478943
    27580 1led:A (2.0) BS03 FUC ? GO:0030246 ... P24146 8478943
    27581 1led:A (2.0) BS04 FUC ? GO:0030246 ... P24146 8478943
    27582 1led:A (2.0) BS05 MN ? GO:0030246 ... P24146 8478943
    27583 1led:A (2.0) BS06 CA ? GO:0030246 ... P24146 8478943
    27584 1led:A (2.0) BS07 SO4 ? GO:0030246 ... P24146 8478943
    27585 1lee:A (1.9) BS01 R36 3.4.23.39 GO:0004190 ... P46925 12454457 PDBbind: -logKd/Ki=7.74, Ki=18nM
    27586 1lei:A (2.7) BS01 dna ? GO:0003677 ... Q04207 11970949 PDBbind: Kd=0.8nM
    27587 1lei:A (2.7) BS02 dna ? GO:0003677 ... Q04207 11970949 PDBbind: Kd=0.8nM
    27588 1lei:B (2.7) BS01 dna ? GO:0003677 ... P25799 11970949 PDBbind: Kd=0.8nM
    27589 1lei:B (2.7) BS02 dna ? GO:0003677 ... P25799 11970949 PDBbind: Kd=0.8nM
    27590 1lel:A (2.9) BS01 BH7 ? GO:0005576 ... P02701 12055191
    27591 1lel:B (2.9) BS01 BH7 ? GO:0005576 ... P02701 12055191
    27592 1lem:A (3.0) BS01 GLC ? GO:0030246 ... P02870 7696853
    27593 1lem:A (3.0) BS02 CA ? GO:0030246 ... P02870 7696853
    27594 1lem:A (3.0) BS03 MN ? GO:0030246 ... P02870 7696853
    27595 1lem:B (3.0) BS01 GLC ? GO:0030246 ... P02870 7696853
    27596 1len:A (1.8) BS01 PO4 ? GO:0030246 ... P02870 7731952
    27597 1len:A (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    27598 1len:A (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    27599 1len:C (1.8) BS01 PO4 ? GO:0030246 ... P02870 7731952
    27600 1len:C (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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