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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    830601 8y0w:Lg (3.4) BS01 rna ? GO:0002181 ... P49207 38698775
    830602 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    830603 8y0w:Lg (3.4) BS03 ZN ? GO:0002181 ... P49207 38698775
    830604 8y0w:Lh (3.4) BS01 rna ? GO:0000463 ... P42766 38698775
    830605 8y0w:Lh (3.4) BS02 rna ? GO:0000463 ... P42766 38698775
    830606 8y0w:Li (3.4) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    830607 8y0w:Lj (3.4) BS01 rna ? GO:0002181 ... P61927 38698775
    830608 8y0w:Lj (3.4) BS02 rna ? GO:0002181 ... P61927 38698775
    830609 8y0w:Lj (3.4) BS03 ZN ? GO:0002181 ... P61927 38698775
    830610 8y0w:Lk (3.4) BS01 rna ? GO:0001501 ... P63173 38698775
    830611 8y0w:Ll (3.4) BS01 rna ? GO:0002181 ... P62891 38698775
    830612 8y0w:Ll (3.4) BS02 rna ? GO:0002181 ... P62891 38698775
    830613 8y0w:Lm (3.4) BS01 rna ? GO:0002181 ... P62987 38698775
    830614 8y0w:Lm (3.4) BS02 ZN ? GO:0002181 ... P62987 38698775
    830615 8y0w:Lo (3.4) BS01 rna ? GO:0002181 ... P83881 38698775
    830616 8y0w:Lo (3.4) BS02 ZN ? GO:0002181 ... P83881 38698775
    830617 8y0w:Lp (3.4) BS01 rna ? GO:0002181 ... P61513 38698775
    830618 8y0w:Lp (3.4) BS02 ZN ? GO:0002181 ... P61513 38698775
    830619 8y0w:Lr (3.4) BS01 rna ? GO:0002181 ... P46779 38698775
    830620 8y0w:S (3.4) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    830621 8y0w:SA (3.4) BS01 rna ? GO:0000028 ... P08865 38698775
    830622 8y0w:SB (3.4) BS01 rna ? GO:0002181 ... P61247 38698775
    830623 8y0w:SC (3.4) BS01 rna ? GO:0002181 ... P15880 38698775
    830624 8y0w:SD (3.4) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    830625 8y0w:SE (3.4) BS01 rna ? GO:0002181 ... P62701 38698775
    830626 8y0w:SF (3.4) BS01 rna ? GO:0000028 ... P46782 38698775
    830627 8y0w:SG (3.4) BS01 rna ? GO:0000082 ... P62753 38698775
    830628 8y0w:SH (3.4) BS01 rna ? GO:0001843 ... P62081 38698775
    830629 8y0w:SI (3.4) BS01 rna ? GO:0000462 ... P62241 38698775
    830630 8y0w:SI (3.4) BS02 rna ? GO:0000462 ... P62241 38698775
    830631 8y0w:SJ (3.4) BS01 rna ? GO:0002181 ... P46781 38698775
    830632 8y0w:SK (3.4) BS01 rna ? GO:0002181 ... P46783 38698775
    830633 8y0w:SL (3.4) BS01 rna ? GO:0002181 ... P62280 38698775
    830634 8y0w:SN (3.4) BS01 rna ? GO:0002181 ... P62277 38698775
    830635 8y0w:SO (3.4) BS01 rna ? GO:0000028 ... P62263 38698775
    830636 8y0w:SP (3.4) BS01 rna ? GO:0000028 ... P62841 38698775
    830637 8y0w:SQ (3.4) BS01 rna ? GO:0000462 ... P62249 38698775
    830638 8y0w:SR (3.4) BS01 rna ? GO:0002181 ... P08708 38698775
    830639 8y0w:SS (3.4) BS01 rna ? GO:0002181 ... P62269 38698775
    830640 8y0w:ST (3.4) BS01 rna ? GO:0000028 ... P39019 38698775
    830641 8y0w:SU (3.4) BS01 rna ? GO:0002181 ... P60866 38698775
    830642 8y0w:SW (3.4) BS01 rna ? GO:0002181 ... P62244 38698775
    830643 8y0w:SX (3.4) BS01 rna ? GO:0002181 ... P62266 38698775
    830644 8y0w:SY (3.4) BS01 rna ? GO:0002181 ... P62847 38698775
    830645 8y0w:SZ (3.4) BS01 rna ? GO:0002181 ... P62851 38698775
    830646 8y0w:Sa (3.4) BS01 rna ? GO:0002181 ... P62854 38698775
    830647 8y0w:Sb (3.4) BS01 rna ? GO:0000028 ... P42677 38698775
    830648 8y0w:Sc (3.4) BS01 rna ? GO:0000028 ... P62857 38698775
    830649 8y0w:Sd (3.4) BS01 rna ? GO:0002181 ... P62273 38698775
    830650 8y0w:Se (3.4) BS01 rna ? GO:0003735 ... P62861 38698775
    830651 8y0w:Sg (3.4) BS01 rna ? GO:0001891 ... P63244 38698775
    830652 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    830653 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    830654 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    830655 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    830656 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    830657 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    830658 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    830659 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    830660 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    830661 8y0x:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 38698775
    830662 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    830663 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    830664 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    830665 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    830666 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    830667 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    830668 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    830669 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    830670 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    830671 8y0x:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38698775
    830672 8y0x:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38698775
    830673 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    830674 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    830675 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    830676 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    830677 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    830678 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    830679 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    830680 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    830681 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    830682 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    830683 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    830684 8y0x:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38698775
    830685 8y0x:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38698775
    830686 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    830687 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    830688 8y0x:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38698775
    830689 8y0x:LX (3.3) BS01 rna ? GO:0000027 ... P62750 38698775
    830690 8y0x:LX (3.3) BS02 rna ? GO:0000027 ... P62750 38698775
    830691 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    830692 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    830693 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    830694 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    830695 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    830696 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    830697 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    830698 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    830699 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    830700 8y0x:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38698775
    830701 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    830702 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    830703 8y0x:Lg (3.3) BS03 ZN ? GO:0002181 ... P49207 38698775
    830704 8y0x:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38698775
    830705 8y0x:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38698775
    830706 8y0x:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    830707 8y0x:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38698775
    830708 8y0x:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38698775
    830709 8y0x:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38698775
    830710 8y0x:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38698775
    830711 8y0x:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38698775
    830712 8y0x:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38698775
    830713 8y0x:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38698775
    830714 8y0x:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38698775
    830715 8y0x:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38698775
    830716 8y0x:Lo (3.3) BS02 rna ? GO:0002181 ... P83881 38698775
    830717 8y0x:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38698775
    830718 8y0x:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38698775
    830719 8y0x:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38698775
    830720 8y0x:S (3.3) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    830721 8y0x:SA (3.3) BS01 rna ? GO:0000028 ... P08865 38698775
    830722 8y0x:SB (3.3) BS01 rna ? GO:0002181 ... P61247 38698775
    830723 8y0x:SC (3.3) BS01 rna ? GO:0002181 ... P15880 38698775
    830724 8y0x:SD (3.3) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    830725 8y0x:SE (3.3) BS01 rna ? GO:0002181 ... P62701 38698775
    830726 8y0x:SF (3.3) BS01 rna ? GO:0000028 ... P46782 38698775
    830727 8y0x:SG (3.3) BS01 rna ? GO:0000082 ... P62753 38698775
    830728 8y0x:SH (3.3) BS01 rna ? GO:0001843 ... P62081 38698775
    830729 8y0x:SI (3.3) BS01 rna ? GO:0000462 ... P62241 38698775
    830730 8y0x:SI (3.3) BS02 rna ? GO:0000462 ... P62241 38698775
    830731 8y0x:SJ (3.3) BS01 rna ? GO:0002181 ... P46781 38698775
    830732 8y0x:SK (3.3) BS01 rna ? GO:0002181 ... P46783 38698775
    830733 8y0x:SL (3.3) BS01 rna ? GO:0002181 ... P62280 38698775
    830734 8y0x:SN (3.3) BS01 rna ? GO:0002181 ... P62277 38698775
    830735 8y0x:SO (3.3) BS01 rna ? GO:0000028 ... P62263 38698775
    830736 8y0x:SP (3.3) BS01 rna ? GO:0000028 ... P62841 38698775
    830737 8y0x:SQ (3.3) BS01 rna ? GO:0000462 ... P62249 38698775
    830738 8y0x:SR (3.3) BS01 rna ? GO:0002181 ... P08708 38698775
    830739 8y0x:SS (3.3) BS01 rna ? GO:0002181 ... P62269 38698775
    830740 8y0x:ST (3.3) BS01 rna ? GO:0000028 ... P39019 38698775
    830741 8y0x:SU (3.3) BS01 rna ? GO:0002181 ... P60866 38698775
    830742 8y0x:SW (3.3) BS01 rna ? GO:0002181 ... P62244 38698775
    830743 8y0x:SX (3.3) BS01 rna ? GO:0002181 ... P62266 38698775
    830744 8y0x:SY (3.3) BS01 rna ? GO:0002181 ... P62847 38698775
    830745 8y0x:SZ (3.3) BS01 rna ? GO:0002181 ... P62851 38698775
    830746 8y0x:Sa (3.3) BS01 rna ? GO:0002181 ... P62854 38698775
    830747 8y0x:Sa (3.3) BS02 ZN ? GO:0002181 ... P62854 38698775
    830748 8y0x:Sb (3.3) BS01 rna ? GO:0000028 ... P42677 38698775
    830749 8y0x:Sc (3.3) BS01 rna ? GO:0000028 ... P62857 38698775
    830750 8y0x:Sd (3.3) BS01 rna ? GO:0002181 ... P62273 38698775
    830751 8y0x:Se (3.3) BS01 rna ? GO:0003735 ... P62861 38698775
    830752 8y0x:Sg (3.3) BS01 rna ? GO:0001891 ... P63244 38698775
    830753 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    830754 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    830755 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    830756 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830757 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830758 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830759 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830760 8y1m:A (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830761 8y1m:A (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830762 8y1m:A (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830763 8y1m:A (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830764 8y1m:A (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830765 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830766 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830767 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830768 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    830769 8y1m:B (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830770 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830771 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830772 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830773 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830774 8y2h:B (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830775 8y2h:B (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830776 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830777 8y2h:F (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830778 8y2h:F (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830779 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830780 8y2h:G (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830781 8y2h:G (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830782 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830783 8y2h:H (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830784 8y2h:H (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830785 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    830786 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    830787 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    830788 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    830789 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    830790 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    830791 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    830792 8y4u:A (2.4) BS01 FE ? GO:0016491 ... Q6ES21 38401306
    830793 8y6b:A (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    830794 8y6b:A (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    830795 8y6b:A (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    830796 8y6b:B (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    830797 8y6b:B (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    830798 8y6b:B (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    830799 8y6b:C (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    830800 8y6b:C (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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