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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    830401 8xxn:SC (3.6) BS01 rna ? GO:0002181 ... P15880 38641729
    830402 8xxn:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    830403 8xxn:SE (3.6) BS01 rna ? GO:0002181 ... P62701 38641729
    830404 8xxn:SF (3.6) BS01 rna ? GO:0000028 ... P46782 38641729
    830405 8xxn:SG (3.6) BS01 rna ? GO:0000082 ... P62753 38641729
    830406 8xxn:SH (3.6) BS01 rna ? GO:0001843 ... P62081 38641729
    830407 8xxn:SI (3.6) BS01 rna ? GO:0000462 ... P62241 38641729
    830408 8xxn:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 38641729
    830409 8xxn:SK (3.6) BS01 rna ? GO:0002181 ... P46783 38641729
    830410 8xxn:SL (3.6) BS01 rna ? GO:0002181 ... P62280 38641729
    830411 8xxn:SM (3.6) BS01 rna ? GO:0002181 ... P25398 38641729
    830412 8xxn:SN (3.6) BS01 rna ? GO:0002181 ... P62277 38641729
    830413 8xxn:SO (3.6) BS01 rna ? GO:0000028 ... P62263 38641729
    830414 8xxn:SP (3.6) BS01 rna ? GO:0000028 ... P62841 38641729
    830415 8xxn:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 38641729
    830416 8xxn:SR (3.6) BS01 rna ? GO:0002181 ... P08708 38641729
    830417 8xxn:SS (3.6) BS01 rna ? GO:0002181 ... P62269 38641729
    830418 8xxn:ST (3.6) BS01 rna ? GO:0000028 ... P39019 38641729
    830419 8xxn:SU (3.6) BS01 rna ? GO:0002181 ... P60866 38641729
    830420 8xxn:SW (3.6) BS01 rna ? GO:0002181 ... P62244 38641729
    830421 8xxn:SX (3.6) BS01 rna ? GO:0002181 ... P62266 38641729
    830422 8xxn:SY (3.6) BS01 rna ? GO:0002181 ... P62847 38641729
    830423 8xxn:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 38641729
    830424 8xxn:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 38641729
    830425 8xxn:Sa (3.6) BS02 ZN ? GO:0002181 ... P62854 38641729
    830426 8xxn:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 38641729
    830427 8xxn:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 38641729
    830428 8xxn:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 38641729
    830429 8xxn:Sd (3.6) BS02 ZN ? GO:0002181 ... P62273 38641729
    830430 8xxn:Se (3.6) BS01 rna ? GO:0003735 ... P62861 38641729
    830431 8xxn:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 38641729
    830432 8xxn:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 38641729
    830433 8xy0:A (1.9) BS01 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    830434 8xy7:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    830435 8xya:A (2.7) BS01 FAR ? GO:0004689 ... P46020 38548794
    830436 8xya:B (2.7) BS01 FAR ? GO:0005515 ... Q93100 38548794
    830437 8xyb:A (3.1) BS01 FAR ? GO:0004689 ... P46020 38548794
    830438 8xzd:A (3.47) BS01 ZN 3.4.-.-
    3.4.17.23    		 N/A A0A3Q7RAT9 38866203
    830439 8xzf:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    830440 8xzg:R (3.2) BS01 peptide ? GO:0001525 ... P35414 38428423
    830441 8xzh:R (2.6) BS01 peptide ? GO:0001525 ... P35414 38428423
    830442 8xzi:R (2.7) BS01 A1D5N ? GO:0001525 ... P35414 38428423
    830443 8xzj:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    830444 8y0p:A (2.62) BS01 peptide ? GO:0007155 ... P35222 N/A
    830445 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    830446 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    830447 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    830448 8y0u:5 (3.59) BS01 rna ? GO:0002182 ... P23301 38698775
    830449 8y0u:LA (3.59) BS01 rna ? GO:0002181 ... P0CX45 38698775
    830450 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    830451 8y0u:LB (3.59) BS01 rna ? GO:0000027 ... P14126 38698775
    830452 8y0u:LC (3.59) BS01 rna ? GO:0002181 ... P10664 38698775
    830453 8y0u:LC (3.59) BS02 rna ? GO:0002181 ... P10664 38698775
    830454 8y0u:LD (3.59) BS01 rna ? GO:0000027 ... P26321 38698775
    830455 8y0u:LD (3.59) BS02 rna ? GO:0000027 ... P26321 38698775
    830456 8y0u:LE (3.59) BS01 rna ? GO:0000027 ... P05739 38698775
    830457 8y0u:LF (3.59) BS01 rna ? GO:0000463 ... P05737 38698775
    830458 8y0u:LF (3.59) BS02 rna ? GO:0000463 ... P05737 38698775
    830459 8y0u:LG (3.59) BS01 rna ? GO:0000470 ... P17076 38698775
    830460 8y0u:LG (3.59) BS02 rna ? GO:0000470 ... P17076 38698775
    830461 8y0u:LH (3.59) BS01 rna ? GO:0002181 ... P05738 38698775
    830462 8y0u:LI (3.59) BS01 rna ? GO:0000027 ... P41805 38698775
    830463 8y0u:LI (3.59) BS02 rna ? GO:0000027 ... P41805 38698775
    830464 8y0u:LJ (3.59) BS01 rna ? GO:0000027 ... Q3E757 38698775
    830465 8y0u:LJ (3.59) BS02 rna ? GO:0000027 ... Q3E757 38698775
    830466 8y0u:LL (3.59) BS01 rna ? GO:0002181 ... Q12690 38698775
    830467 8y0u:LM (3.59) BS01 rna ? GO:0000027 ... P36105 38698775
    830468 8y0u:LN (3.59) BS01 rna ? GO:0002181 ... P05748 38698775
    830469 8y0u:LN (3.59) BS02 rna ? GO:0002181 ... P05748 38698775
    830470 8y0u:LN (3.59) BS03 MG ? GO:0002181 ... P05748 38698775
    830471 8y0u:LO (3.59) BS01 rna ? GO:0000470 ... P26784 38698775
    830472 8y0u:LP (3.59) BS01 rna ? GO:0000448 ... P05740 38698775
    830473 8y0u:LP (3.59) BS02 rna ? GO:0000448 ... P05740 38698775
    830474 8y0u:LQ (3.59) BS01 rna ? GO:0002181 ... P0CX49 38698775
    830475 8y0u:LR (3.59) BS01 rna ? GO:0002181 ... P0CX82 38698775
    830476 8y0u:LR (3.59) BS02 rna ? GO:0002181 ... P0CX82 38698775
    830477 8y0u:LS (3.59) BS01 rna ? GO:0002181 ... P0CX23 38698775
    830478 8y0u:LS (3.59) BS02 rna ? GO:0002181 ... P0CX23 38698775
    830479 8y0u:LT (3.59) BS01 rna ? GO:0002181 ... Q02753 38698775
    830480 8y0u:LT (3.59) BS02 rna ? GO:0002181 ... Q02753 38698775
    830481 8y0u:LU (3.59) BS01 rna ? GO:0002181 ... P05749 38698775
    830482 8y0u:LV (3.59) BS01 rna ? GO:0002181 ... P0CX41 38698775
    830483 8y0u:LW (3.59) BS01 rna ? GO:0002181 ... P04449 38698775
    830484 8y0u:LX (3.59) BS01 rna ? GO:0000027 ... P04456 38698775
    830485 8y0u:LX (3.59) BS02 rna ? GO:0000027 ... P04456 38698775
    830486 8y0u:LY (3.59) BS01 rna ? GO:0002181 ... P05743 38698775
    830487 8y0u:LY (3.59) BS02 rna ? GO:0002181 ... P05743 38698775
    830488 8y0u:LZ (3.59) BS01 rna ? GO:0002181 ... P0C2H6 38698775
    830489 8y0u:La (3.59) BS01 rna ? GO:0002181 ... P02406 38698775
    830490 8y0u:Lb (3.59) BS01 rna ? GO:0002181 ... P05747 38698775
    830491 8y0u:Lc (3.59) BS01 rna ? GO:0002181 ... P14120 38698775
    830492 8y0u:Ld (3.59) BS01 rna ? GO:0002181 ... P0C2H8 38698775
    830493 8y0u:Le (3.59) BS01 rna ? GO:0002181 ... P38061 38698775
    830494 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    830495 8y0u:Lf (3.59) BS01 rna ? GO:0000027 ... P05744 38698775
    830496 8y0u:Lg (3.59) BS01 rna ? GO:0002181 ... P87262 38698775
    830497 8y0u:Lg (3.59) BS02 ZN ? GO:0002181 ... P87262 38698775
    830498 8y0u:Lh (3.59) BS01 rna ? GO:0000463 ... P0CX84 38698775
    830499 8y0u:Lh (3.59) BS02 rna ? GO:0000463 ... P0CX84 38698775
    830500 8y0u:Li (3.59) BS01 rna ? GO:0002181 ... P05745 38698775
    830501 8y0u:Lj (3.59) BS01 rna ? GO:0000448 ... P49166 38698775
    830502 8y0u:Lj (3.59) BS02 rna ? GO:0000448 ... P49166 38698775
    830503 8y0u:Lj (3.59) BS03 ZN ? GO:0000448 ... P49166 38698775
    830504 8y0u:Lk (3.59) BS01 rna ? GO:0002181 ... P49167 38698775
    830505 8y0u:Ll (3.59) BS01 rna ? GO:0002181 ... P04650 38698775
    830506 8y0u:Ll (3.59) BS02 rna ? GO:0002181 ... P04650 38698775
    830507 8y0u:Lm (3.59) BS01 rna ? GO:0000027 ... P0CH08 38698775
    830508 8y0u:Lm (3.59) BS02 ZN ? GO:0000027 ... P0CH08 38698775
    830509 8y0u:Lo (3.59) BS01 rna ? GO:0002181 ... P0CX27 38698775
    830510 8y0u:Lo (3.59) BS02 ZN ? GO:0002181 ... P0CX27 38698775
    830511 8y0u:Lp (3.59) BS01 rna ? GO:0002181 ... P0CX25 38698775
    830512 8y0u:Lp (3.59) BS02 ZN ? GO:0002181 ... P0CX25 38698775
    830513 8y0u:P0 (3.59) BS01 rna ? GO:0000027 ... P05317 38698775
    830514 8y0u:P2 (3.59) BS01 rna ? GO:0000027 ... P0CX53 38698775
    830515 8y0u:SA (3.59) BS01 rna ? GO:0000028 ... P32905 38698775
    830516 8y0u:SB (3.59) BS01 rna ? GO:0000462 ... P33442 38698775
    830517 8y0u:SB (3.59) BS02 rna ? GO:0000462 ... P33442 38698775
    830518 8y0u:SC (3.59) BS01 rna ? GO:0000054 ... P25443 38698775
    830519 8y0u:SE (3.59) BS01 rna ? GO:0002181 ... P0CX35 38698775
    830520 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    830521 8y0u:SG (3.59) BS01 rna ? GO:0000462 ... P0CX37 38698775
    830522 8y0u:SH (3.59) BS01 rna ? GO:0002181 ... P26786 38698775
    830523 8y0u:SI (3.59) BS01 rna ? GO:0000462 ... P0CX39 38698775
    830524 8y0u:SI (3.59) BS02 rna ? GO:0000462 ... P0CX39 38698775
    830525 8y0u:SJ (3.59) BS01 rna ? GO:0000462 ... O13516 38698775
    830526 8y0u:SL (3.59) BS01 rna ? GO:0000028 ... P0CX47 38698775
    830527 8y0u:SN (3.59) BS01 rna ? GO:0000462 ... P05756 38698775
    830528 8y0u:SN (3.59) BS02 rna ? GO:0000462 ... P05756 38698775
    830529 8y0u:SO (3.59) BS01 rna ? GO:0000028 ... P39516 38698775
    830530 8y0u:SP (3.59) BS01 rna ? GO:0000028 ... Q01855 38698775
    830531 8y0u:SQ (3.59) BS01 rna ? GO:0000462 ... P0CX51 38698775
    830532 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    830533 8y0u:ST (3.59) BS01 rna ? GO:0000028 ... P07280 38698775
    830534 8y0u:ST (3.59) BS02 MG ? GO:0000028 ... P07280 38698775
    830535 8y0u:ST (3.59) BS03 MG ? GO:0000028 ... P07280 38698775
    830536 8y0u:SU (3.59) BS01 rna ? GO:0000462 ... P38701 38698775
    830537 8y0u:SW (3.59) BS01 rna ? GO:0002181 ... P0C0W1 38698775
    830538 8y0u:SX (3.59) BS01 rna ? GO:0000462 ... P0CX29 38698775
    830539 8y0u:SY (3.59) BS01 rna ? GO:0000462 ... P0CX31 38698775
    830540 8y0u:SZ (3.59) BS01 rna ? GO:0002181 ... Q3E792 38698775
    830541 8y0u:Sa (3.59) BS01 rna ? GO:0000054 ... P39939 38698775
    830542 8y0u:Sb (3.59) BS01 rna ? GO:0000028 ... P35997 38698775
    830543 8y0u:Sc (3.59) BS01 rna ? GO:0000028 ... Q3E7X9 38698775
    830544 8y0u:Sd (3.59) BS01 rna ? GO:0002181 ... P41057 38698775
    830545 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    830546 8y0u:Sd (3.59) BS03 ZN ? GO:0002181 ... P41057 38698775
    830547 8y0u:Se (3.59) BS01 rna ? GO:0002181 ... P0CX33 38698775
    830548 8y0u:Sf (3.59) BS01 rna ? GO:0000028 ... P05759 38698775
    830549 8y0u:Sf (3.59) BS02 ZN ? GO:0000028 ... P05759 38698775
    830550 8y0u:s (3.59) BS01 rna ? GO:0000723 ... P39015 38698775
    830551 8y0w:5 (3.4) BS01 rna ? GO:0003723 ... P63241 38698775
    830552 8y0w:CB (3.4) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    830553 8y0w:CB (3.4) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    830554 8y0w:LA (3.4) BS01 rna ? GO:0002181 ... P62917 38698775
    830555 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    830556 8y0w:LB (3.4) BS01 rna ? GO:0002181 ... P39023 38698775
    830557 8y0w:LC (3.4) BS01 rna ? GO:0002181 ... P36578 38698775
    830558 8y0w:LC (3.4) BS02 rna ? GO:0002181 ... P36578 38698775
    830559 8y0w:LD (3.4) BS01 rna ? GO:0000027 ... P46777 38698775
    830560 8y0w:LD (3.4) BS02 rna ? GO:0000027 ... P46777 38698775
    830561 8y0w:LE (3.4) BS01 rna ? GO:0000027 ... Q02878 38698775
    830562 8y0w:LF (3.4) BS01 rna ? GO:0000463 ... P18124 38698775
    830563 8y0w:LF (3.4) BS02 rna ? GO:0000463 ... P18124 38698775
    830564 8y0w:LG (3.4) BS01 rna ? GO:0000470 ... P62424 38698775
    830565 8y0w:LG (3.4) BS02 rna ? GO:0000470 ... P62424 38698775
    830566 8y0w:LH (3.4) BS01 rna ? GO:0002181 ... P32969 38698775
    830567 8y0w:LI (3.4) BS01 rna ? GO:0000027 ... Q96L21 38698775
    830568 8y0w:LI (3.4) BS02 rna ? GO:0000027 ... Q96L21 38698775
    830569 8y0w:LJ (3.4) BS01 rna ? GO:0000027 ... P62913 38698775
    830570 8y0w:LJ (3.4) BS02 rna ? GO:0000027 ... P62913 38698775
    830571 8y0w:LL (3.4) BS01 rna ? GO:0001824 ... P26373 38698775
    830572 8y0w:LL (3.4) BS02 rna ? GO:0001824 ... P26373 38698775
    830573 8y0w:LM (3.4) BS01 rna ? GO:0002181 ... P50914 38698775
    830574 8y0w:LN (3.4) BS01 rna ? GO:0002181 ... P61313 38698775
    830575 8y0w:LN (3.4) BS02 rna ? GO:0002181 ... P61313 38698775
    830576 8y0w:LO (3.4) BS01 rna ? GO:0002181 ... P40429 38698775
    830577 8y0w:LP (3.4) BS01 rna ? GO:0002181 ... P18621 38698775
    830578 8y0w:LP (3.4) BS02 rna ? GO:0002181 ... P18621 38698775
    830579 8y0w:LQ (3.4) BS01 rna ? GO:0002181 ... Q07020 38698775
    830580 8y0w:LR (3.4) BS01 rna ? GO:0002181 ... P84098 38698775
    830581 8y0w:LR (3.4) BS02 rna ? GO:0002181 ... P84098 38698775
    830582 8y0w:LS (3.4) BS01 rna ? GO:0002181 ... Q02543 38698775
    830583 8y0w:LS (3.4) BS02 rna ? GO:0002181 ... Q02543 38698775
    830584 8y0w:LT (3.4) BS01 rna ? GO:0002181 ... P46778 38698775
    830585 8y0w:LT (3.4) BS02 rna ? GO:0002181 ... P46778 38698775
    830586 8y0w:LU (3.4) BS01 rna ? GO:0002181 ... P35268 38698775
    830587 8y0w:LV (3.4) BS01 rna ? GO:0000122 ... P62829 38698775
    830588 8y0w:LW (3.4) BS01 rna ? GO:0000027 ... P83731 38698775
    830589 8y0w:LX (3.4) BS01 rna ? GO:0000027 ... P62750 38698775
    830590 8y0w:LX (3.4) BS02 rna ? GO:0000027 ... P62750 38698775
    830591 8y0w:LY (3.4) BS01 rna ? GO:0002181 ... P61254 38698775
    830592 8y0w:LY (3.4) BS02 rna ? GO:0002181 ... P61254 38698775
    830593 8y0w:LZ (3.4) BS01 rna ? GO:0002181 ... P61353 38698775
    830594 8y0w:La (3.4) BS01 rna ? GO:0002181 ... P46776 38698775
    830595 8y0w:Lb (3.4) BS01 rna ? GO:0002181 ... P47914 38698775
    830596 8y0w:Lc (3.4) BS01 rna ? GO:0002181 ... P62888 38698775
    830597 8y0w:Ld (3.4) BS01 rna ? GO:0002181 ... P62899 38698775
    830598 8y0w:Le (3.4) BS01 rna ? GO:0002181 ... P62910 38698775
    830599 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    830600 8y0w:Lf (3.4) BS01 rna ? GO:0000049 ... P18077 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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