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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    829601 8x6r:D (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    829602 8x6r:D (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    829603 8x6r:E (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    829604 8x6r:E (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    829605 8x6r:F (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    829606 8x6r:F (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    829607 8x72:A (2.2) BS01 ANP 2.7.11.21 GO:0004672 ... P53350 N/A
    829608 8x72:A (2.2) BS02 ZN 2.7.11.21 GO:0004672 ... P53350 N/A
    829609 8x77:B (3.52) BS01 SAH 2.1.1.85 GO:0000785 ... Q86TU7 38755176
    829610 8x77:C (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    829611 8x77:E (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    829612 8x77:F (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    829613 8x77:H (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    829614 8x79:R (2.41) BS01 Y9Q ? GO:0004930 ... P43119 38335293
    829615 8x7a:R (2.56) BS01 Y9J ? GO:0004930 ... P43119 38335293
    829616 8x7u:A (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829617 8x7u:B (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829618 8x7u:C (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829619 8x7u:C (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829620 8x7u:D (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829621 8x7u:D (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829622 8x7u:E (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829623 8x7u:E (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829624 8x7u:F (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    829625 8x83:A (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829626 8x83:B (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829627 8x83:C (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829628 8x83:D (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829629 8x84:A (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829630 8x84:B (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829631 8x84:C (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829632 8x84:D (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    829633 8x8l:R (2.7) BS01 peptide ? GO:0004930 ... P35346 N/A
    829634 8x8n:R (2.9) BS01 peptide ? GO:0004930 ... P35346 N/A
    829635 8x8q:F (3.14) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    829636 8x90:A (2.95) BS01 PS1 ? GO:0001540 ... O00555 38443561
    829637 8x90:A (2.95) BS02 CLR ? GO:0001540 ... O00555 38443561
    829638 8x90:A (2.95) BS03 PT5 ? GO:0001540 ... O00555 38443561
    829639 8x90:A (2.95) BS04 CA ? GO:0001540 ... O00555 38443561
    829640 8x90:A (2.95) BS05 Y01 ? GO:0001540 ... O00555 38443561
    829641 8x90:A (2.95) BS06 CLR ? GO:0001540 ... O00555 38443561
    829642 8x90:A (2.95) BS07 Y01 ? GO:0001540 ... O00555 38443561
    829643 8x90:A (2.95) BS08 Y01 ? GO:0001540 ... O00555 38443561
    829644 8x90:A (2.95) BS09 CLR ? GO:0001540 ... O00555 38443561
    829645 8x90:A (2.95) BS10 CLR ? GO:0001540 ... O00555 38443561
    829646 8x90:B (2.95) BS01 CA ? N/A P54289 38443561
    829647 8x91:A (3.11) BS01 peptide ? GO:0001540 ... O00555 38443561
    829648 8x91:A (3.11) BS02 CLR ? GO:0001540 ... O00555 38443561
    829649 8x91:A (3.11) BS03 PT5 ? GO:0001540 ... O00555 38443561
    829650 8x91:A (3.11) BS04 CA ? GO:0001540 ... O00555 38443561
    829651 8x91:A (3.11) BS05 Y01 ? GO:0001540 ... O00555 38443561
    829652 8x91:A (3.11) BS06 CLR ? GO:0001540 ... O00555 38443561
    829653 8x91:A (3.11) BS07 Y01 ? GO:0001540 ... O00555 38443561
    829654 8x91:A (3.11) BS08 Y01 ? GO:0001540 ... O00555 38443561
    829655 8x91:A (3.11) BS09 CLR ? GO:0001540 ... O00555 38443561
    829656 8x91:A (3.11) BS10 CLR ? GO:0001540 ... O00555 38443561
    829657 8x91:B (3.11) BS01 CA ? N/A P54289 38443561
    829658 8x93:A (2.92) BS01 CLR ? GO:0001540 ... O00555 38443561
    829659 8x93:A (2.92) BS02 PT5 ? GO:0001540 ... O00555 38443561
    829660 8x93:A (2.92) BS03 Y01 ? GO:0001540 ... O00555 38443561
    829661 8x93:A (2.92) BS04 CLR ? GO:0001540 ... O00555 38443561
    829662 8x93:A (2.92) BS05 CLR ? GO:0001540 ... O00555 38443561
    829663 8x93:A (2.92) BS06 Y01 ? GO:0001540 ... O00555 38443561
    829664 8x93:A (2.92) BS07 Y01 ? GO:0001540 ... O00555 38443561
    829665 8x93:A (2.92) BS08 CLR ? GO:0001540 ... O00555 38443561
    829666 8x93:A (2.92) BS09 CLR ? GO:0001540 ... O00555 38443561
    829667 8x93:A (2.92) BS10 CA ? GO:0001540 ... O00555 38443561
    829668 8x93:B (2.92) BS01 CA ? N/A P54289 38443561
    829669 8x9d:A (2.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829670 8x9d:A (2.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829671 8x9d:A (2.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829672 8x9d:A (2.11) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829673 8x9e:A (2.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829674 8x9e:A (2.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829675 8x9e:A (2.5) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829676 8x9e:A (2.5) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829677 8x9f:A (2.48) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829678 8x9f:A (2.48) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829679 8x9f:A (2.48) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829680 8x9f:A (2.48) BS04 S8I 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829681 8x9g:A (3.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829682 8x9g:A (3.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829683 8x9g:A (3.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829684 8x9g:A (3.11) BS04 S7L 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829685 8x9h:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829686 8x9h:A (2.2) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829687 8x9h:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829688 8x9h:A (2.2) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    829689 8xa9:A (2.32) BS01 dna 3.1.-.- N/A Q9BQP7 38471810
    829690 8xa9:A (2.32) BS02 dna 3.1.-.- N/A Q9BQP7 38471810
    829691 8xa9:A (2.32) BS03 CA 3.1.-.- N/A Q9BQP7 38471810
    829692 8xa9:A (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    829693 8xa9:B (2.32) BS01 dna 3.1.-.- N/A Q9BQP7 38471810
    829694 8xa9:B (2.32) BS02 dna 3.1.-.- N/A Q9BQP7 38471810
    829695 8xa9:B (2.32) BS03 dna 3.1.-.- N/A Q9BQP7 38471810
    829696 8xa9:B (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    829697 8xa9:B (2.32) BS05 CA 3.1.-.- N/A Q9BQP7 38471810
    829698 8xam:A (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    829699 8xam:A (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    829700 8xam:A (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    829701 8xam:B (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    829702 8xam:B (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    829703 8xam:B (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    829704 8xas:A (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    829705 8xas:A (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    829706 8xas:B (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    829707 8xas:B (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    829708 8xas:C (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    829709 8xas:C (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    829710 8xas:D (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    829711 8xas:D (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    829712 8xas:E (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    829713 8xas:E (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    829714 8xas:F (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    829715 8xas:F (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    829716 8xbe:A (3.4) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    829717 8xbg:A (3.43) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    829718 8xbh:R (2.83) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    829719 8xbi:R (3.06) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    829720 8xbs:A (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    829721 8xbs:A (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    829722 8xbs:A (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    829723 8xbs:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    829724 8xbs:B (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    829725 8xbs:B (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    829726 8xbs:B (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    829727 8xbs:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    829728 8xbt:A (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    829729 8xbt:A (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    829730 8xbt:B (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    829731 8xbt:B (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    829732 8xbt:C (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    829733 8xbt:C (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    829734 8xbt:D (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    829735 8xbt:D (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    829736 8xbt:E (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    829737 8xbt:E (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    829738 8xbt:F (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    829739 8xbt:F (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    829740 8xbt:G (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    829741 8xbt:G (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    829742 8xbt:H (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    829743 8xbt:H (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    829744 8xbt:O (4.12) BS01 dna ? GO:0000150 ... Q06609 38509361
    829745 8xbu:A (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    829746 8xbu:A (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    829747 8xbu:B (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    829748 8xbu:B (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    829749 8xbu:C (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    829750 8xbu:C (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    829751 8xbu:D (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    829752 8xbu:D (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    829753 8xbu:E (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    829754 8xbu:E (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    829755 8xbu:F (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    829756 8xbu:F (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    829757 8xbu:G (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    829758 8xbu:G (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    829759 8xbu:H (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    829760 8xbu:H (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    829761 8xbu:L (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    829762 8xbu:M (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    829763 8xbu:R (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    829764 8xbw:E (2.89) BS01 dna ? GO:0000786 ... P68431 38509361
    829765 8xbw:F (2.89) BS01 dna ? GO:0000781 ... P62805 38509361
    829766 8xc1:A (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    829767 8xc1:A (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    829768 8xc1:A (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    829769 8xc1:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    829770 8xc1:A (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    829771 8xc1:A (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    829772 8xc1:B (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    829773 8xc1:B (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    829774 8xc1:B (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    829775 8xc1:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    829776 8xc1:B (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    829777 8xc1:B (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    829778 8xc4:B (3.24) BS01 FUC ? GO:0019031 ... Q4VCP5 38773072
    829779 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    829780 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    829781 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    829782 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    829783 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    829784 8xcm:C (3.08) BS01 HEC ? N/A M1V1V5 N/A
    829785 8xcm:C (3.08) BS02 HEC ? N/A M1V1V5 N/A
    829786 8xcm:C (3.08) BS03 HEC ? N/A M1V1V5 N/A
    829787 8xcm:C (3.08) BS04 U10 ? N/A M1V1V5 N/A
    829788 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    829789 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    829790 8xcn:C (3.02) BS01 HEC ? N/A M1V1V5 N/A
    829791 8xcn:C (3.02) BS02 HEC ? N/A M1V1V5 N/A
    829792 8xcn:C (3.02) BS03 HEC ? N/A M1V1V5 N/A
    829793 8xcn:C (3.02) BS04 U10 ? N/A M1V1V5 N/A
    829794 8xco:A (2.64) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    829795 8xcp:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829796 8xcp:A (2.64) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829797 8xcq:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829798 8xcq:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829799 8xcr:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829800 8xcr:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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