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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    817001 8t8b:1F (2.65) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    817002 8t8b:1F (2.65) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    817003 8t8b:1F (2.65) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    817004 8t8b:1F (2.65) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    817005 8t8b:1F (2.65) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    817006 8t8b:1F (2.65) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    817007 8t8b:1F (2.65) BS12 ARG ? GO:0003735 ... Q5SHN9 37433044
    817008 8t8b:1G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    817009 8t8b:1G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    817010 8t8b:1G (2.65) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    817011 8t8b:1H (2.65) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    817012 8t8b:1I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    817013 8t8b:1N (2.65) BS01 rna ? GO:0003729 ... P60488 37433044
    817014 8t8b:1N (2.65) BS02 MG ? GO:0003729 ... P60488 37433044
    817015 8t8b:1N (2.65) BS03 MG ? GO:0003729 ... P60488 37433044
    817016 8t8b:1O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    817017 8t8b:1O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    817018 8t8b:1P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    817019 8t8b:1P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    817020 8t8b:1Q (2.65) BS01 rna ? GO:0000049 ... P60489 37433044
    817021 8t8b:1Q (2.65) BS02 rna ? GO:0000049 ... P60489 37433044
    817022 8t8b:1Q (2.65) BS03 MG ? GO:0000049 ... P60489 37433044
    817023 8t8b:1Q (2.65) BS04 MG ? GO:0000049 ... P60489 37433044
    817024 8t8b:1Q (2.65) BS05 MG ? GO:0000049 ... P60489 37433044
    817025 8t8b:1Q (2.65) BS06 MG ? GO:0000049 ... P60489 37433044
    817026 8t8b:1R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    817027 8t8b:1R (2.65) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    817028 8t8b:1R (2.65) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    817029 8t8b:1R (2.65) BS04 MG ? GO:0003735 ... Q9Z9H5 37433044
    817030 8t8b:1S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    817031 8t8b:1S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    817032 8t8b:1T (2.65) BS01 rna ? GO:0003735 ... P60490 37433044
    817033 8t8b:1T (2.65) BS02 rna ? GO:0003735 ... P60490 37433044
    817034 8t8b:1U (2.65) BS01 rna ? GO:0000027 ... P60491 37433044
    817035 8t8b:1U (2.65) BS02 MG ? GO:0000027 ... P60491 37433044
    817036 8t8b:1U (2.65) BS03 MG ? GO:0000027 ... P60491 37433044
    817037 8t8b:1U (2.65) BS04 MG ? GO:0000027 ... P60491 37433044
    817038 8t8b:1U (2.65) BS05 MG ? GO:0000027 ... P60491 37433044
    817039 8t8b:1U (2.65) BS06 MG ? GO:0000027 ... P60491 37433044
    817040 8t8b:1V (2.65) BS01 rna ? GO:0003723 ... P60492 37433044
    817041 8t8b:1V (2.65) BS02 MG ? GO:0003723 ... P60492 37433044
    817042 8t8b:1V (2.65) BS03 MG ? GO:0003723 ... P60492 37433044
    817043 8t8b:1V (2.65) BS04 MG ? GO:0003723 ... P60492 37433044
    817044 8t8b:1V (2.65) BS05 MG ? GO:0003723 ... P60492 37433044
    817045 8t8b:1W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    817046 8t8b:1W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    817047 8t8b:1W (2.65) BS03 MG ? GO:0003735 ... Q5SHP3 37433044
    817048 8t8b:1X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    817049 8t8b:1X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 37433044
    817050 8t8b:1Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    817051 8t8b:1Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    817052 8t8b:1Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    817053 8t8b:1Z (2.65) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    817054 8t8b:1b (2.65) BS01 rna ? GO:0003735 ... P80371 37433044
    817055 8t8b:1b (2.65) BS02 MG ? GO:0003735 ... P80371 37433044
    817056 8t8b:1c (2.65) BS01 rna ? GO:0003676 ... P80372 37433044
    817057 8t8b:1d (2.65) BS01 rna ? GO:0003723 ... P80373 37433044
    817058 8t8b:1d (2.65) BS02 MG ? GO:0003723 ... P80373 37433044
    817059 8t8b:1d (2.65) BS03 SF4 ? GO:0003723 ... P80373 37433044
    817060 8t8b:1e (2.65) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    817061 8t8b:1e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    817062 8t8b:1f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    817063 8t8b:1g (2.65) BS01 rna ? GO:0000028 ... P17291 37433044
    817064 8t8b:1h (2.65) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    817065 8t8b:1i (2.65) BS01 rna ? GO:0000049 ... P80374 37433044
    817066 8t8b:1j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    817067 8t8b:1k (2.65) BS01 rna ? GO:0003735 ... P80376 37433044
    817068 8t8b:1k (2.65) BS02 MG ? GO:0003735 ... P80376 37433044
    817069 8t8b:1l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    817070 8t8b:1l (2.65) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    817071 8t8b:1m (2.65) BS01 rna ? GO:0000049 ... P80377 37433044
    817072 8t8b:1m (2.65) BS02 rna ? GO:0000049 ... P80377 37433044
    817073 8t8b:1m (2.65) BS03 MG ? GO:0000049 ... P80377 37433044
    817074 8t8b:1n (2.65) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    817075 8t8b:1n (2.65) BS02 MG ? GO:0003735 ... P0DOY6 37433044
    817076 8t8b:1n (2.65) BS03 ZN ? GO:0003735 ... P0DOY6 37433044
    817077 8t8b:1o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    817078 8t8b:1o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    817079 8t8b:1p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    817080 8t8b:1q (2.65) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    817081 8t8b:1r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    817082 8t8b:1s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    817083 8t8b:1t (2.65) BS01 rna ? GO:0003723 ... P80380 37433044
    817084 8t8b:1t (2.65) BS02 MG ? GO:0003723 ... P80380 37433044
    817085 8t8b:1y (2.65) BS01 rna ? GO:0005515 ... P0AD49 37433044
    817086 8t8b:1y (2.65) BS02 MG ? GO:0005515 ... P0AD49 37433044
    817087 8t8b:20 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    817088 8t8b:20 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    817089 8t8b:20 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    817090 8t8b:21 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    817091 8t8b:22 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    817092 8t8b:23 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    817093 8t8b:23 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    817094 8t8b:23 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    817095 8t8b:24 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    817096 8t8b:24 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    817097 8t8b:25 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    817098 8t8b:25 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    817099 8t8b:25 (2.65) BS03 ZN ? GO:0003735 ... P80339 37433044
    817100 8t8b:26 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    817101 8t8b:26 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    817102 8t8b:27 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    817103 8t8b:27 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    817104 8t8b:28 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    817105 8t8b:29 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    817106 8t8b:29 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    817107 8t8b:2D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    817108 8t8b:2D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    817109 8t8b:2D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    817110 8t8b:2D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044
    817111 8t8b:2D (2.65) BS05 MG ? GO:0002181 ... P60405 37433044
    817112 8t8b:2D (2.65) BS06 MG ? GO:0002181 ... P60405 37433044
    817113 8t8b:2D (2.65) BS07 MG ? GO:0002181 ... P60405 37433044
    817114 8t8b:2D (2.65) BS08 MG ? GO:0002181 ... P60405 37433044
    817115 8t8b:2D (2.65) BS09 MG ? GO:0002181 ... P60405 37433044
    817116 8t8b:2E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    817117 8t8b:2E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    817118 8t8b:2E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    817119 8t8b:2E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    817120 8t8b:2F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    817121 8t8b:2F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    817122 8t8b:2F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    817123 8t8b:2G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    817124 8t8b:2G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    817125 8t8b:2G (2.65) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    817126 8t8b:2H (2.65) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    817127 8t8b:2I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    817128 8t8b:2N (2.65) BS01 rna ? GO:0003729 ... P60488 37433044
    817129 8t8b:2O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    817130 8t8b:2O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    817131 8t8b:2P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    817132 8t8b:2Q (2.65) BS01 rna ? GO:0000049 ... P60489 37433044
    817133 8t8b:2Q (2.65) BS02 rna ? GO:0000049 ... P60489 37433044
    817134 8t8b:2Q (2.65) BS03 MG ? GO:0000049 ... P60489 37433044
    817135 8t8b:2Q (2.65) BS04 MG ? GO:0000049 ... P60489 37433044
    817136 8t8b:2R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    817137 8t8b:2S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    817138 8t8b:2S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    817139 8t8b:2T (2.65) BS01 rna ? GO:0003735 ... P60490 37433044
    817140 8t8b:2T (2.65) BS02 rna ? GO:0003735 ... P60490 37433044
    817141 8t8b:2U (2.65) BS01 rna ? GO:0000027 ... P60491 37433044
    817142 8t8b:2V (2.65) BS01 rna ? GO:0003723 ... P60492 37433044
    817143 8t8b:2V (2.65) BS02 MG ? GO:0003723 ... P60492 37433044
    817144 8t8b:2V (2.65) BS03 MG ? GO:0003723 ... P60492 37433044
    817145 8t8b:2W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    817146 8t8b:2W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    817147 8t8b:2X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    817148 8t8b:2Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    817149 8t8b:2Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    817150 8t8b:2Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    817151 8t8b:2Z (2.65) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    817152 8t8b:2b (2.65) BS01 rna ? GO:0003735 ... P80371 37433044
    817153 8t8b:2c (2.65) BS01 rna ? GO:0003676 ... P80372 37433044
    817154 8t8b:2d (2.65) BS01 rna ? GO:0003723 ... P80373 37433044
    817155 8t8b:2d (2.65) BS02 SF4 ? GO:0003723 ... P80373 37433044
    817156 8t8b:2e (2.65) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    817157 8t8b:2f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    817158 8t8b:2f (2.65) BS02 MG ? GO:0003735 ... Q5SLP8 37433044
    817159 8t8b:2g (2.65) BS01 rna ? GO:0000028 ... P17291 37433044
    817160 8t8b:2h (2.65) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    817161 8t8b:2i (2.65) BS01 rna ? GO:0000049 ... P80374 37433044
    817162 8t8b:2j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    817163 8t8b:2j (2.65) BS02 MG ? GO:0000049 ... Q5SHN7 37433044
    817164 8t8b:2k (2.65) BS01 rna ? GO:0003735 ... P80376 37433044
    817165 8t8b:2k (2.65) BS02 MG ? GO:0003735 ... P80376 37433044
    817166 8t8b:2l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    817167 8t8b:2m (2.65) BS01 rna ? GO:0000049 ... P80377 37433044
    817168 8t8b:2n (2.65) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    817169 8t8b:2n (2.65) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    817170 8t8b:2o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    817171 8t8b:2o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    817172 8t8b:2p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    817173 8t8b:2q (2.65) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    817174 8t8b:2r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    817175 8t8b:2s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    817176 8t8b:2t (2.65) BS01 rna ? GO:0003723 ... P80380 37433044
    817177 8t8b:2t (2.65) BS02 MG ? GO:0003723 ... P80380 37433044
    817178 8t8b:2y (2.65) BS01 rna ? GO:0005515 ... P0AD49 37433044
    817179 8t8c:10 (2.6) BS01 rna ? GO:0003735 ... P60493 37433044
    817180 8t8c:10 (2.6) BS02 rna ? GO:0003735 ... P60493 37433044
    817181 8t8c:10 (2.6) BS03 MG ? GO:0003735 ... P60493 37433044
    817182 8t8c:10 (2.6) BS04 MG ? GO:0003735 ... P60493 37433044
    817183 8t8c:10 (2.6) BS05 MG ? GO:0003735 ... P60493 37433044
    817184 8t8c:10 (2.6) BS06 MG ? GO:0003735 ... P60493 37433044
    817185 8t8c:11 (2.6) BS01 rna ? GO:0003735 ... P60494 37433044
    817186 8t8c:11 (2.6) BS02 MG ? GO:0003735 ... P60494 37433044
    817187 8t8c:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    817188 8t8c:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    817189 8t8c:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    817190 8t8c:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    817191 8t8c:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    817192 8t8c:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    817193 8t8c:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    817194 8t8c:15 (2.6) BS01 rna ? GO:0003735 ... P80339 37433044
    817195 8t8c:15 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    817196 8t8c:15 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    817197 8t8c:15 (2.6) BS04 MG ? GO:0003735 ... P80339 37433044
    817198 8t8c:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 37433044
    817199 8t8c:16 (2.6) BS01 rna ? GO:0000049 ... P35871 37433044
    817200 8t8c:16 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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