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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 1cp3:B (2.3) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 9045680
    6002 1cp4:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 2261467
    6003 1cp5:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    6004 1cp6:A (1.9) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 10413478
    6005 1cp6:A (1.9) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 10413478
    6006 1cp6:A (1.9) BS03 BUB 3.4.11.10 GO:0006508 ... Q01693 10413478 MOAD: Ki=10uM
    PDBbind: -logKd/Ki=5.00, Ki=10uM
    6007 1cp7:A (1.58) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 10771423
    6008 1cp7:A (1.58) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 10771423
    6009 1cp7:A (1.58) BS03 CA 3.4.11.24 GO:0004177 ... P80561 10771423
    6010 1cp9:B (2.5) BS01 CA ? GO:0016787 ... Q7WZI9 10548042
    6011 1cpd:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6012 1cpe:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6013 1cpf:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6014 1cpg:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6015 1cph:B (1.9) BS01 peptide ? GO:0005179 ... P01317 1477273
    6016 1cph:B (1.9) BS02 DCE ? GO:0005179 ... P01317 1477273
    6017 1cpi:A (2.05) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 N/A
    6018 1cpi:B (2.05) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 N/A
    6019 1cpm:A (2.0) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    6020 1cpn:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    6021 1cpo:A (1.9) BS01 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6022 1cpo:A (1.9) BS02 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6023 1cpo:A (1.9) BS03 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6024 1cpo:A (1.9) BS04 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6025 1cpo:A (1.9) BS05 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6026 1cpo:A (1.9) BS06 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6027 1cpo:A (1.9) BS07 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6028 1cpo:A (1.9) BS08 MN 1.11.1.10 GO:0004601 ... P04963 8747463
    6029 1cpo:A (1.9) BS09 HEM 1.11.1.10 GO:0004601 ... P04963 8747463
    6030 1cpq:A (1.72) BS01 HEM ? GO:0005506 ... P00147 8676382
    6031 1cpr:A (2.1) BS01 ZN ? GO:0005506 ... P00147 15299853
    6032 1cpr:A (2.1) BS02 HEM ? GO:0005506 ... P00147 15299853
    6033 1cps:A (2.25) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 1527041
    6034 1cps:A (2.25) BS02 CPM 3.4.17.1 GO:0004181 ... P00730 1527041 MOAD: Ki=0.22uM
    PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    6035 1cpt:A (2.3) BS01 HEM 1.14.-.- GO:0004497 ... P33006 8120894
    6036 1cpu:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    6037 1cpu:A (2.0) BS02 AGL 3.2.1.1 GO:0003824 ... P04746 10769135
    6038 1cpu:A (2.0) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    6039 1cpu:A (2.0) BS04 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    6040 1cpu:A (2.0) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10769135
    6041 1cpu:A (2.0) BS06 HMC 3.2.1.1 GO:0003824 ... P04746 10769135
    6042 1cpw:A (2.2) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    6043 1cpx:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 9843422
    6044 1cq1:A (1.9) BS01 BGC 1.1.5.2 GO:0008876 ... P13650 10508152
    6045 1cq1:A (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6046 1cq1:A (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6047 1cq1:A (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6048 1cq1:A (1.9) BS05 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    6049 1cq1:B (1.9) BS01 BGC 1.1.5.2 GO:0008876 ... P13650 10508152
    6050 1cq1:B (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6051 1cq1:B (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6052 1cq1:B (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6053 1cq1:B (1.9) BS05 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    6054 1cq2:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10725379
    6055 1cq4:A (1.8) BS01 peptide ? GO:0004867 ... P01053 9990011
    6056 1cq6:A (2.7) BS01 PY4 2.6.1.1 GO:0003824 ... P00509 10858450
    6057 1cq7:A (2.4) BS01 PY5 2.6.1.1 GO:0003824 ... P00509 10858450
    6058 1cq8:A (2.4) BS01 PY6 2.6.1.1 GO:0003824 ... P00509 10858450
    6059 1cq9:A (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6060 1cq9:A (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6061 1cq9:B (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6062 1cq9:B (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6063 1cq9:C (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6064 1cq9:C (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6065 1cq9:D (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6066 1cq9:D (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6067 1cqe:A (3.1) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 8121489
    6068 1cqe:A (3.1) BS02 FLP 1.14.99.1 GO:0004601 ... P05979 8121489 BindingDB: IC50=150nM, Ki=1000nM
    6069 1cqe:B (3.1) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 8121489
    6070 1cqe:B (3.1) BS02 FLP 1.14.99.1 GO:0004601 ... P05979 8121489 BindingDB: IC50=150nM, Ki=1000nM
    6071 1cqf:A (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6072 1cqf:A (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6073 1cqf:B (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6074 1cqf:B (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6075 1cqf:B (2.2) BS03 GAL ? GO:0005576 ... P69179 N/A
    6076 1cqf:B (2.2) BS04 GLA ? GO:0005576 ... P69179 N/A
    6077 1cqf:C (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6078 1cqf:C (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6079 1cqf:D (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6080 1cqf:D (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6081 1cqf:E (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6082 1cqf:E (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6083 1cqg:A (-1.00) BS01 peptide ? GO:0000122 ... P10599 8736558
    6084 1cqh:A (-1.00) BS01 peptide ? GO:0000122 ... P10599 8736558
    6085 1cqi:A (3.3) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6086 1cqi:A (3.3) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6087 1cqi:B (3.3) BS01 MG 6.2.1.5 GO:0000287 ... P0A836 10625475
    6088 1cqi:B (3.3) BS02 ADP 6.2.1.5 GO:0000287 ... P0A836 10625475
    6089 1cqi:B (3.3) BS03 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6090 1cqi:D (3.3) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6091 1cqi:D (3.3) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6092 1cqi:E (3.3) BS01 MG 6.2.1.5 GO:0000287 ... P0A836 10625475
    6093 1cqi:E (3.3) BS02 ADP 6.2.1.5 GO:0000287 ... P0A836 10625475
    6094 1cqj:A (2.9) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6095 1cqj:A (2.9) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6096 1cqj:B (2.9) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6097 1cqj:B (2.9) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6098 1cqj:D (2.9) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6099 1cqj:D (2.9) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6100 1cqj:E (2.9) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6101 1cqp:A (2.6) BS01 MG ? N/A P20701 10493852
    6102 1cqp:A (2.6) BS02 803 ? N/A P20701 10493852 PDBbind: -logKd/Ki=5.62, IC50=2.4uM
    BindingDB: Kd=12900nM, IC50=2400nM
    6103 1cqp:A (2.6) BS03 803 ? N/A P20701 10493852 PDBbind: -logKd/Ki=5.62, IC50=2.4uM
    BindingDB: Kd=12900nM, IC50=2400nM
    6104 1cqp:B (2.6) BS01 803 ? N/A P20701 10493852 BindingDB: Kd=12900nM, IC50=2400nM
    6105 1cqp:B (2.6) BS02 MG ? N/A P20701 10493852
    6106 1cqp:B (2.6) BS03 803 ? N/A P20701 10493852 BindingDB: Kd=12900nM, IC50=2400nM
    6107 1cqq:A (1.85) BS01 AG7 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... P04936 10500114
    6108 1cqr:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6109 1cqr:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6110 1cqr:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6111 1cqr:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6112 1cqr:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6113 1cqr:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6114 1cqr:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6115 1cqr:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6116 1cqr:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6117 1cqr:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6118 1cqs:A (1.9) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 10653633
    6119 1cqs:B (1.9) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 10653633
    6120 1cqt:A (3.2) BS01 dna ? GO:0000981 ... P14859 10541551
    6121 1cqt:A (3.2) BS02 dna ? GO:0000981 ... P14859 10541551
    6122 1cqt:A (3.2) BS03 peptide ? GO:0000981 ... P14859 10541551
    6123 1cqt:B (3.2) BS01 dna ? GO:0000981 ... P14859 10541551
    6124 1cqt:B (3.2) BS02 dna ? GO:0000981 ... P14859 10541551
    6125 1cqt:B (3.2) BS03 peptide ? GO:0000981 ... P14859 10541551
    6126 1cqv:A (2.06) BS01 ZN ? GO:0005576 ... P34071 11526318
    6127 1cqw:A (1.5) BS01 IOD 3.8.1.5 GO:0003824 ... P59336 10587433
    6128 1cqw:A (1.5) BS02 IOD 3.8.1.5 GO:0003824 ... P59336 10587433
    6129 1cqx:A (1.75) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 8557026
    6130 1cqx:A (1.75) BS02 FAD 1.14.12.17 GO:0005344 ... P39662 8557026
    6131 1cqx:B (1.75) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 8557026
    6132 1cqx:B (1.75) BS02 FAD 1.14.12.17 GO:0005344 ... P39662 8557026
    6133 1cr1:A (2.3) BS01 TTP 2.7.7.-
    3.6.4.12
    GO:0003678 ... P03692 10535735
    6134 1cr2:A (2.3) BS01 DTP 2.7.7.-
    3.6.4.12
    GO:0003678 ... P03692 10535735
    6135 1cr4:A (2.5) BS01 TYD 2.7.7.-
    3.6.4.12
    GO:0003678 ... P03692 10535735
    6136 1cr5:A (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    6137 1cr5:A (2.3) BS02 NEN ? GO:0016887 ... P18759 10611286
    6138 1cr5:B (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    6139 1cr5:C (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    6140 1cr5:C (2.3) BS02 NEN ? GO:0016887 ... P18759 10611286
    6141 1cr6:A (2.8) BS01 CPU 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34914 10485878 PDBbind: -logKd/Ki=8.51, Ki=3.1nM
    6142 1cr6:B (2.8) BS01 CPU 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34914 10485878
    6143 1cr7:A (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    6144 1cr7:A (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    6145 1cr7:A (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    6146 1cr7:A (2.6) BS04 MN ? GO:0030246 ... P02872 11288176
    6147 1cr7:B (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    6148 1cr7:B (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    6149 1cr7:B (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    6150 1cr7:B (2.6) BS04 MN ? GO:0030246 ... P02872 11288176
    6151 1cr7:C (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    6152 1cr7:C (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    6153 1cr7:D (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    6154 1cr7:D (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    6155 1cr7:E (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    6156 1cr7:E (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    6157 1cr7:E (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    6158 1cr7:E (2.6) BS04 MN ? GO:0030246 ... P02872 11288176
    6159 1cr7:F (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    6160 1cr7:F (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    6161 1cr7:G (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    6162 1cr7:G (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    6163 1cr7:H (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    6164 1cr7:H (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    6165 1cr8:A (-1.00) BS01 CA ? N/A Q07954 10318830
    6166 1cra:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8331673
    6167 1cra:A (1.9) BS02 TRI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8331673
    6168 1crb:A (2.1) BS01 RTL ? GO:0002138 ... P02696 7683727
    6169 1crc:A (2.08) BS01 HEC ? GO:0005515 ... P00004 8591047
    6170 1crc:B (2.08) BS01 HEC ? GO:0005515 ... P00004 8591047
    6171 1crg:A (2.0) BS01 HEC ? GO:0005515 ... P00044 8114094
    6172 1crh:A (1.9) BS01 HEC ? GO:0005515 ... P00044 8114094
    6173 1cri:A (2.0) BS01 HEM ? GO:0005515 ... P00044 8114094
    6174 1crj:A (2.05) BS01 HEC ? GO:0005515 ... P00044 8114094
    6175 1crp:A (-1.00) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 8142349
    6176 1crq:A (-1.00) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 8142349
    6177 1crr:A (-1.00) BS01 MG 3.6.5.2 GO:0003924 ... P01112 8142349
    6178 1crr:A (-1.00) BS02 GDP 3.6.5.2 GO:0003924 ... P01112 8142349
    6179 1cru:A (1.5) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    6180 1cru:A (1.5) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    6181 1cru:A (1.5) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    6182 1cru:A (1.5) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10518528
    6183 1cru:A (1.5) BS05 HDN 1.1.5.2 GO:0008876 ... P13650 10518528
    6184 1cru:B (1.5) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    6185 1cru:B (1.5) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    6186 1cru:B (1.5) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    6187 1cru:B (1.5) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10518528
    6188 1crx:A (2.4) BS01 dna ? GO:0003677 ... P06956 9288963
    6189 1crx:A (2.4) BS02 dna ? GO:0003677 ... P06956 9288963
    6190 1crx:B (2.4) BS01 dna ? GO:0003677 ... P06956 9288963
    6191 1crx:B (2.4) BS02 dna ? GO:0003677 ... P06956 9288963
    6192 1crx:B (2.4) BS03 dna ? GO:0003677 ... P06956 9288963
    6193 1cry:A (3.0) BS01 HEC ? GO:0009055 ... P00083 15299438
    6194 1cs0:A (2.0) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10587438
    6195 1cs0:A (2.0) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10587438
    6196 1cs0:A (2.0) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10587438
    6197 1cs0:A (2.0) BS04 PO4 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10587438
    6198 1cs0:A (2.0) BS05 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10587438
    6199 1cs0:A (2.0) BS06 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10587438
    6200 1cs0:A (2.0) BS07 ORN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10587438

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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