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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 1cld:A (-1.00) BS02 CD ? GO:0000981 ... P08657 7552715
    5802 1cle:A (2.0) BS01 CLL 3.1.1.3 GO:0004806 ... P32947 7788294
    5803 1cle:B (2.0) BS01 CLL 3.1.1.3 GO:0004806 ... P32947 7788294
    5804 1clf:A (-1.00) BS01 SF4 ? GO:0009055 ... P00195 7556151
    5805 1clf:A (-1.00) BS02 SF4 ? GO:0009055 ... P00195 7556151
    5806 1cli:A (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    5807 1cli:B (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    5808 1cli:C (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    5809 1cli:D (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    5810 1clk:A (1.9) BS01 MG 5.3.1.5 GO:0000287 ... P50910 10666592
    5811 1clk:A (1.9) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    5812 1cll:A (1.7) BS01 CA ? GO:0000086 ... P0DP23 1474585
    5813 1cll:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 1474585
    5814 1cll:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 1474585
    5815 1cll:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 1474585
    5816 1clm:A (1.8) BS01 CA ? GO:0005509 ... P07463 8453381
    5817 1clm:A (1.8) BS02 CA ? GO:0005509 ... P07463 8453381
    5818 1clm:A (1.8) BS03 CA ? GO:0005509 ... P07463 8453381
    5819 1clm:A (1.8) BS04 CA ? GO:0005509 ... P07463 8453381
    5820 1clq:A (2.7) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    5821 1clq:A (2.7) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    5822 1clq:A (2.7) BS03 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    5823 1clq:A (2.7) BS04 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    5824 1clq:A (2.7) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    5825 1clq:A (2.7) BS06 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    5826 1clq:A (2.7) BS07 GDP 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    5827 1cls:A (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    5828 1cls:B (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    5829 1cls:C (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    5830 1cls:D (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    5831 1cls:D (1.9) BS02 DEC ? GO:0004601 ... P68871 8639491
    5832 1clu:A (1.7) BS01 DBG 3.6.5.2 GO:0003924 ... P01112 10359839 MOAD: Kd=5.4nM
    PDBbind: -logKd/Ki=8.27, Kd=5.4nM
    5833 1clv:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P56634 10508777
    5834 1clx:A (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    5835 1clx:B (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    5836 1clx:C (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    5837 1clx:D (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    5838 1clz:H (2.8) BS01 GAL ? N/A P03987 7664109
    5839 1clz:H (2.8) BS02 FUC ? N/A P03987 7664109
    5840 1clz:H (2.8) BS03 NON ? N/A P03987 7664109
    5841 1cm0:A (2.3) BS01 COA 2.3.1.48
    2.3.1.57
    GO:0004402 ... Q92831 10393169 BindingDB: IC50=41910nM
    5842 1cm0:B (2.3) BS01 COA 2.3.1.48
    2.3.1.57
    GO:0004402 ... Q92831 10393169 BindingDB: IC50=41910nM
    5843 1cm1:A (2.0) BS01 peptide ? GO:0000922 ... P62157 9438860
    5844 1cm1:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    5845 1cm1:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    5846 1cm1:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    5847 1cm1:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    5848 1cm1:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    5849 1cm4:A (2.0) BS01 peptide ? GO:0000922 ... P62157 9438860
    5850 1cm4:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    5851 1cm4:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    5852 1cm4:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    5853 1cm4:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    5854 1cm4:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    5855 1cm4:A (2.0) BS07 CA ? GO:0000922 ... P62157 9438860
    5856 1cm4:A (2.0) BS08 CA ? GO:0000922 ... P62157 9438860
    5857 1cm4:A (2.0) BS09 CA ? GO:0000922 ... P62157 9438860
    5858 1cm4:A (2.0) BS10 CA ? GO:0000922 ... P62157 9438860
    5859 1cm4:A (2.0) BS11 CA ? GO:0000922 ... P62157 9438860
    5860 1cm4:A (2.0) BS12 CA ? GO:0000922 ... P62157 9438860
    5861 1cm4:A (2.0) BS13 CA ? GO:0000922 ... P62157 9438860
    5862 1cm4:A (2.0) BS14 CA ? GO:0000922 ... P62157 9438860
    5863 1cm4:A (2.0) BS15 CA ? GO:0000922 ... P62157 9438860
    5864 1cm4:A (2.0) BS16 CA ? GO:0000922 ... P62157 9438860
    5865 1cm4:A (2.0) BS17 CA ? GO:0000922 ... P62157 9438860
    5866 1cm4:A (2.0) BS18 CA ? GO:0000922 ... P62157 9438860
    5867 1cm5:A (2.3) BS01 CO3 2.3.1.54 GO:0003824 ... P09373 10504733
    5868 1cm5:B (2.3) BS01 CO3 2.3.1.54 GO:0003824 ... P09373 10504733
    5869 1cm8:A (2.4) BS01 ANP 2.7.11.24 GO:0000165 ... P53778 10508788
    5870 1cm8:B (2.4) BS01 ANP 2.7.11.24 GO:0000165 ... P53778 10508788
    5871 1cma:A (2.8) BS01 dna ? GO:0003677 ... P0A8U6 1406951
    5872 1cma:A (2.8) BS02 SAM ? GO:0003677 ... P0A8U6 1406951
    5873 1cma:A (2.8) BS03 SAM ? GO:0003677 ... P0A8U6 1406951
    5874 1cma:B (2.8) BS01 dna ? GO:0003677 ... P0A8U6 1406951
    5875 1cma:B (2.8) BS02 SAM ? GO:0003677 ... P0A8U6 1406951
    5876 1cma:B (2.8) BS03 SAM ? GO:0003677 ... P0A8U6 1406951
    5877 1cmc:A (1.8) BS01 MG ? GO:0003677 ... P0A8U6 2677753
    5878 1cmc:A (1.8) BS02 SAM ? GO:0003677 ... P0A8U6 2677753
    5879 1cmc:A (1.8) BS03 SAM ? GO:0003677 ... P0A8U6 2677753
    5880 1cmc:B (1.8) BS01 SAM ? GO:0003677 ... P0A8U6 2677753
    5881 1cmc:B (1.8) BS02 MG ? GO:0003677 ... P0A8U6 2677753
    5882 1cmc:B (1.8) BS03 SAM ? GO:0003677 ... P0A8U6 2677753
    5883 1cmi:A (2.5) BS01 peptide ? GO:0000776 ... P63167 10426949
    5884 1cmi:B (2.5) BS01 peptide ? GO:0000776 ... P63167 10426949
    5885 1cmj:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    5886 1cmk:E (2.9) BS01 peptide 2.7.11.11 GO:0001669 ... P36887 8251932
    5887 1cmk:E (2.9) BS02 MYR 2.7.11.11 GO:0001669 ... P36887 8251932
    5888 1cml:A (1.69) BS01 MLC 2.3.1.74 GO:0009058 ... P30074 10426957
    5889 1cml:A (1.69) BS02 PIN 2.3.1.74 GO:0009058 ... P30074 10426957
    5890 1cmn:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    5891 1cmp:A (1.9) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8142383
    5892 1cmq:A (2.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8142383
    5893 1cmt:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8528082
    5894 1cmu:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8528082
    5895 1cmx:C (2.25) BS01 peptide 3.4.19.12 GO:0004843 ... P35127 10406793
    5896 1cmy:A (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    5897 1cmy:B (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    5898 1cmy:C (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    5899 1cmy:D (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    5900 1cn3:A (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    5901 1cn3:B (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    5902 1cn3:D (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    5903 1cn3:E (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    5904 1cnb:A (2.35) BS01 BME 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7803386
    5905 1cnc:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7803386
    5906 1cne:A (3.0) BS01 FAD 1.7.1.1 GO:0016491 ... P17571 7760334
    5907 1cnf:A (2.7) BS01 FAD 1.7.1.1 GO:0016491 ... P17571 7760334
    5908 1cnf:A (2.7) BS02 ADP 1.7.1.1 GO:0016491 ... P17571 7760334
    5909 1cng:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5910 1cnh:A (2.05) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5911 1cni:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5912 1cnj:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5913 1cnk:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5914 1cnm:A (2.2) BS01 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    5915 1cnm:A (2.2) BS02 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    5916 1cno:A (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5917 1cno:B (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5918 1cno:C (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5919 1cno:D (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5920 1cno:E (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5921 1cno:F (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5922 1cno:G (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5923 1cno:G (2.2) BS02 HEC ? GO:0009055 ... P82903 10369779
    5924 1cno:H (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    5925 1cnq:A (2.27) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 9708979
    5926 1cnq:A (2.27) BS02 F6P 3.1.3.11 GO:0005737 ... P00636 9708979
    5927 1cnq:A (2.27) BS03 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    5928 1cnq:A (2.27) BS04 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    5929 1cnq:A (2.27) BS05 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    5930 1cnq:A (2.27) BS06 PO4 3.1.3.11 GO:0005737 ... P00636 9708979
    5931 1cnw:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893
    5932 1cnw:A (2.0) BS02 EG1 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893 MOAD: Kd=19nM
    PDBbind: -logKd/Ki=7.72, Kd=19nM
    5933 1cnx:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893
    5934 1cnx:A (1.9) BS02 EG2 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893 MOAD: Kd=43nM
    PDBbind: -logKd/Ki=7.37, Kd=43nM
    5935 1cny:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893
    5936 1cny:A (2.3) BS02 EG3 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7608893 MOAD: Kd=14nM
    PDBbind: -logKd/Ki=7.85, Kd=14nM
    5937 1cnz:A (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    5938 1cnz:B (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    5939 1co0:A (-1.00) BS01 dna ? GO:0003677 ... P0A881 N/A
    5940 1co0:A (-1.00) BS02 dna ? GO:0003677 ... P0A881 N/A
    5941 1co0:A (-1.00) BS03 TRP ? GO:0003677 ... P0A881 N/A
    5942 1co0:A (-1.00) BS04 TRP ? GO:0003677 ... P0A881 N/A
    5943 1co0:B (-1.00) BS01 dna ? GO:0003677 ... P0A881 N/A
    5944 1co0:B (-1.00) BS02 dna ? GO:0003677 ... P0A881 N/A
    5945 1co0:B (-1.00) BS03 TRP ? GO:0003677 ... P0A881 N/A
    5946 1co0:B (-1.00) BS04 TRP ? GO:0003677 ... P0A881 N/A
    5947 1co4:A (-1.00) BS01 ZN ? GO:0003677 ... P41772 9665167
    5948 1co6:A (1.6) BS01 HEC ? GO:0009055 ... P00083 7674304
    5949 1co7:E (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00763 N/A
    5950 1co8:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5951 1co9:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5952 1cob:A (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    5953 1cob:A (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    5954 1cob:B (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    5955 1cob:B (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    5956 1coh:A (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    5957 1coh:B (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    5958 1coh:C (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    5959 1coh:D (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    5960 1coj:A (1.9) BS01 FE 1.15.1.1 GO:0004784 ... Q9X6W9 9236127
    5961 1com:A (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5962 1com:A (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5963 1com:B (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5964 1com:B (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5965 1com:C (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5966 1com:C (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5967 1com:D (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5968 1com:D (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5969 1com:E (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5970 1com:E (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5971 1com:F (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5972 1com:F (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5973 1com:G (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5974 1com:G (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5975 1com:H (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5976 1com:I (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5977 1com:J (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5978 1com:K (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    5979 1con:A (2.0) BS01 CD ? GO:0030246 ... P02866 15299493
    5980 1con:A (2.0) BS02 CA ? GO:0030246 ... P02866 15299493
    5981 1con:A (2.0) BS03 CD ? GO:0030246 ... P02866 15299493
    5982 1cor:A (-1.00) BS01 HEC ? GO:0005506 ... P00101 1327105
    5983 1cot:A (1.7) BS01 HEC ? GO:0009055 ... P00096 8179333
    5984 1cow:A (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    5985 1cow:B (3.1) BS01 MG 3.6.1.34 GO:0005515 ... P19483 8692918
    5986 1cow:B (3.1) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    5987 1cow:C (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    5988 1cow:C (3.1) BS02 ADP 3.6.1.34 GO:0005515 ... P19483 8692918
    5989 1cow:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 8692918
    5990 1cow:E (3.1) BS01 AUR 7.1.2.2 GO:0005515 ... P00829 8692918
    5991 1cow:F (3.1) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 8692918
    5992 1cow:F (3.1) BS02 AUR 7.1.2.2 GO:0005515 ... P00829 8692918
    5993 1coy:A (1.8) BS01 AND 1.1.3.6
    5.3.3.1
    GO:0004769 ... P22637 8218217
    5994 1coy:A (1.8) BS02 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P22637 8218217
    5995 1coz:A (2.0) BS01 CTP 2.7.7.39 GO:0003824 ... P27623 10508782
    5996 1coz:B (2.0) BS01 CTP 2.7.7.39 GO:0003824 ... P27623 10508782
    5997 1cp0:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5998 1cp2:A (1.93) BS01 SF4 1.18.6.1 GO:0005524 ... P00456 9677296
    5999 1cp2:B (1.93) BS01 SF4 1.18.6.1 GO:0005524 ... P00456 9677296
    6000 1cp3:A (2.3) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 9045680

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218