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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24601 1jyc:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24602 1jyc:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24603 1jyc:C (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24604 1jyc:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24605 1jyc:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24606 1jyc:D (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24607 1jyc:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24608 1jyc:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24609 1jyi:A (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24610 1jyi:A (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24611 1jyi:A (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24612 1jyi:B (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24613 1jyi:B (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24614 1jyi:B (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24615 1jyi:C (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24616 1jyi:C (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24617 1jyi:C (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24618 1jyi:D (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24619 1jyi:D (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24620 1jyi:D (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24621 1jyl:A (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24622 1jyl:A (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24623 1jyl:B (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24624 1jyl:B (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24625 1jyl:C (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24626 1jyl:C (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24627 1jyl:C (2.4) BS03 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24628 1jyl:D (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24629 1jyl:D (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24630 1jym:A (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24631 1jym:B (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24632 1jym:C (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24633 1jym:D (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24634 1jym:E (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24635 1jym:F (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24636 1jym:G (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24637 1jym:H (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24638 1jym:I (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24639 1jym:J (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24640 1jyn:A (1.8) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 11732897
    24641 1jyn:A (1.8) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24642 1jyn:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24643 1jyn:A (1.8) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24644 1jyn:A (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24645 1jyn:A (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24646 1jyn:A (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24647 1jyn:A (1.8) BS08 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24648 1jyn:B (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24649 1jyn:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24650 1jyn:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24651 1jyn:B (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24652 1jyn:B (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24653 1jyn:B (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24654 1jyn:B (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24655 1jyn:C (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24656 1jyn:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24657 1jyn:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24658 1jyn:C (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24659 1jyn:C (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24660 1jyn:C (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24661 1jyn:C (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24662 1jyn:D (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24663 1jyn:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24664 1jyn:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24665 1jyn:D (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24666 1jyn:D (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24667 1jyn:D (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24668 1jyq:A (2.0) BS01 peptide ? N/A P62993 11827484
    24669 1jyq:B (2.0) BS01 peptide ? N/A P62993 11827484
    24670 1jyr:A (1.55) BS01 peptide ? N/A P62993 11827484
    24671 1jys:A (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    24672 1jys:B (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    24673 1jyv:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24674 1jyv:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24675 1jyv:A (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24676 1jyv:A (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24677 1jyv:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24678 1jyv:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24679 1jyv:B (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24680 1jyv:B (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24681 1jyv:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24682 1jyv:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24683 1jyv:C (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24684 1jyv:C (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24685 1jyv:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24686 1jyv:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24687 1jyv:D (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24688 1jyv:D (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24689 1jyw:A (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24690 1jyw:A (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24691 1jyw:A (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24692 1jyw:B (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24693 1jyw:B (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24694 1jyw:B (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24695 1jyw:C (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24696 1jyw:C (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24697 1jyw:C (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24698 1jyw:D (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24699 1jyw:D (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24700 1jyw:D (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24701 1jyx:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24702 1jyx:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24703 1jyx:A (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24704 1jyx:A (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24705 1jyx:A (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24706 1jyx:A (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24707 1jyx:A (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24708 1jyx:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24709 1jyx:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24710 1jyx:B (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24711 1jyx:B (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24712 1jyx:B (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24713 1jyx:B (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24714 1jyx:B (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24715 1jyx:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24716 1jyx:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24717 1jyx:C (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24718 1jyx:C (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24719 1jyx:C (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24720 1jyx:C (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24721 1jyx:C (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24722 1jyx:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24723 1jyx:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24724 1jyx:D (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24725 1jyx:D (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24726 1jyx:D (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24727 1jyx:D (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24728 1jyx:D (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24729 1jz2:A (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24730 1jz2:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24731 1jz2:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24732 1jz2:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24733 1jz2:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24734 1jz2:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24735 1jz2:B (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24736 1jz2:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24737 1jz2:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24738 1jz2:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24739 1jz2:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24740 1jz2:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24741 1jz2:C (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24742 1jz2:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24743 1jz2:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24744 1jz2:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24745 1jz2:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24746 1jz2:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24747 1jz2:D (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24748 1jz2:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24749 1jz2:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24750 1jz2:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24751 1jz2:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24752 1jz2:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24753 1jz3:A (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24754 1jz3:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24755 1jz3:A (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24756 1jz3:B (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24757 1jz3:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24758 1jz3:B (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24759 1jz3:C (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24760 1jz3:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24761 1jz3:C (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24762 1jz3:D (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24763 1jz3:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24764 1jz3:D (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24765 1jz4:A (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24766 1jz4:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24767 1jz4:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24768 1jz4:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24769 1jz4:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24770 1jz4:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24771 1jz4:A (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24772 1jz4:B (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24773 1jz4:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24774 1jz4:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24775 1jz4:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24776 1jz4:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24777 1jz4:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24778 1jz4:B (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24779 1jz4:C (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24780 1jz4:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24781 1jz4:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24782 1jz4:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24783 1jz4:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24784 1jz4:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24785 1jz4:C (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24786 1jz4:D (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24787 1jz4:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24788 1jz4:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24789 1jz4:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24790 1jz4:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24791 1jz4:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24792 1jz5:A (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24793 1jz5:A (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24794 1jz5:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24795 1jz5:B (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24796 1jz5:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24797 1jz5:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24798 1jz5:C (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24799 1jz5:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24800 1jz5:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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