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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    RNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 5odv:T
    (4.0)
    BS01 >5odv:t (identical to 8acb:B, 8acc:B, 5bkl:i, 5bkl:ll, 5bkn:i, 5bkn:ll, 5bud:E, 5c0y:C, 8enk:N, 5fn1:B, 6hxx:Aa, 6hxx:Ab, 6hxx:Ac, 6hxx:Ad, 6hxx:Ae, 6hxx:Af, 6hxx:Ag, 6hxx:Ah, 6hxx:Ai, 6hxx:Aj, 6hxx:Ak, 6hxx:Al, 6hxx:Am, 6hxx:An, 6hxx:Ao, 6hxx:Ap, 6hxx:Aq, 6hxx:Ar, 6hxx:As, 6hxx:At, 6hxx:Au, 6hxx:Av, 6hxx:Aw, 6hxx:Ax, 6hxx:Ay, 6hxx:Az, 6hxx:Ba, 6hxx:Bb, 6hxx:Bc, 6hxx:Bd, 6hxx:Be, 6hxx:Bf, 6hxx:Bg, 6hxx:Bh, 6hxx:Bi, 5ip2:E, 4j7l:B, 4j7m:B, 7m3t:i, 7m3t:ll, 7m50:i, 1m8v:T, 5odv:a, 5odv:b, 5odv:c, 5odv:d, 5odv:e, 5odv:f, 5odv:g, 5odv:h, 5odv:i, 5odv:j, 5odv:k, 5odv:l, 5odv:m, 5odv:n, 5odv:o, 5odv:p, 5odv:q, 5odv:r, 5odv:s, 5odv:u, 5odv:v, 5odv:w, 5odv:x, 7og6:R, 8opc:Ab, 8opc:Ad, 8opc:Af, 8opc:Ah, 8opc:Aj, 8opc:Al, 8opc:An, 8opc:Ap, 8opc:Ar, 8opc:At, 8opc:Av, 8opc:Ax, 8opc:Az, 8opc:Bb, 8opc:Bd, 8opc:Bf, 8opc:Bh, 8opc:Bj, 8opc:Bl, 8opc:Bn, 8opc:Bp, 8opc:Br, 8opc:Bt, 8opc:Bv, 8opc:Bx, 8opc:Bz, 8opc:Cb, 8opc:Cd, 8ope:Ab, 8ope:Ad, 8ope:Af, 8ope:Ah, 8ope:Aj, 8ope:Al, 8ope:An, 8ope:Ap, 8ope:Ar, 8ope:At, 8ope:Av, 8ope:Ax, 8ope:Az, 8ope:Bb, 8ope:Bd, 8ope:Bf, 8ope:Bh, 8ope:Bj, 8ope:Bl, 8ope:Bn, 8ope:Bp, 8opl:Aj, 8opl:Ak, 8opl:Al, 8opl:Am, 8opl:An, 8opl:Ao, 8opl:Ap, 8opl:Aq, 8opl:Ar, 8opl:Bb, 8opl:Bc, 8opl:Bd, 8opl:Be, 8opl:Bf, 8opl:Bg, 8opl:Bh, 8opl:Bi, 8opl:Bj, 8opl:Bt, 8opl:Bu, 8opl:Bv, 8opl:Bw, 8opl:Bx, 8opl:By, 8opl:Bz, 8opl:Ca, 8opl:Cb, 3pf5:R, 6ppn:A, 6ppn:I, 8r08:Z1, 6t34:a, 6t34:b, 6t34:c, 6t34:d, 6t34:e, 6t34:f, 6t34:g, 6t34:h, 6t34:i, 6t34:j, 6t34:k, 6t34:l, 6t34:m, 6t34:n, 6t34:o, 6t34:p, 6t34:q, 6t34:r, 6t34:s, 6wre:D, 7z52:R)
    uuuuu
    .....
    ? GO:0019028 ... Q70J31 28948231

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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