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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8ch6:I
    (5.9)    		 BS02 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000245 ... Q15428 37165190
    2 8ch6:O
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000398 ... O43660 37165190
    3 8ch6:Q
    (5.9)    		 BS02 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000398 ... Q9P013 37165190
    4 8ch6:a
    (5.9)    		 BS02 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000244 ... Q6P2Q9 37165190
    5 8ch6:h
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000387 ... P62306 37165190
    6 8ch6:i
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000245 ... P62304 37165190
    7 8ch6:j
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000243 ... P62318 37165190
    8 8ch6:k
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000243 ... P62314 37165190
    9 8ch6:l
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000245 ... P62316 37165190
    10 8ch6:m
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000245 ... P62308 37165190
    11 8ch6:n
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000387 ... P14678 37165190
    12 8ch6:q
    (5.9)    		 BS01 >8ch6:e (identical to 7qtt:e)
    gguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagauuuccg
uggagaggaacaaucugagauuuuuugaggccuugcuuuggcaaggcu
.<<<<<<<<<<.........<<<<<<<<...........>>>>>>>>...
.>>>>>>>>>>.................<<<<<<<......>>>>>>>
    		 ? GO:0000398 ... Q9UQ35 37165190
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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