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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8rt5:c
    (2.69)
    BS02 >8rt5:e (identical to 7o3t:A, 7o3t:D, 7o3t:G, 7o3t:J, 7o3t:M, 7o3t:P, 7o3t:S, 7o3t:u, 7o3t:V, 7o3t:Y, 7o3t:b, 7o3t:e, 7o3t:h, 7o3t:k, 7o3t:n, 7o3t:y, 8rt5:A, 8rt5:D, 8rt5:G, 8rt5:J, 8rt5:M, 8rt5:P, 8rt5:S, 8rt5:u, 8rt5:V, 8rt5:Y, 8rt5:b, 8rt5:h, 8rt5:k, 8rt5:n, 8rt5:y, 8rt6:u, 8rt6:y, 8rt7:u, 8rt7:y, 8rt8:u, 8rt8:y)
    KTPYELARERMLRSGLTAG
    N/A N/A O50336 38886579
    2 8rt5:f
    (2.69)
    BS01 >8rt5:e (identical to 7o3t:A, 7o3t:D, 7o3t:G, 7o3t:J, 7o3t:M, 7o3t:P, 7o3t:S, 7o3t:u, 7o3t:V, 7o3t:Y, 7o3t:b, 7o3t:e, 7o3t:h, 7o3t:k, 7o3t:n, 7o3t:y, 8rt5:A, 8rt5:D, 8rt5:G, 8rt5:J, 8rt5:M, 8rt5:P, 8rt5:S, 8rt5:u, 8rt5:V, 8rt5:Y, 8rt5:b, 8rt5:h, 8rt5:k, 8rt5:n, 8rt5:y, 8rt6:u, 8rt6:y, 8rt7:u, 8rt7:y, 8rt8:u, 8rt8:y)
    KTPYELARERMLRSGLTAG
    N/A N/A O50336 38886579

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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