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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kmx:bA (2.41) BS47 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIN6 31932639
    2 6kmx:bA (2.41) BS48 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIN6 31932639
    3 6kmx:bA (2.41) BS49 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIN6 31932639
    4 6kmx:bA (2.41) BS50 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIN6 31932639
    5 6kmx:bB (2.41) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    6 6kmx:bB (2.41) BS02 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    7 6kmx:bB (2.41) BS03 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    8 6kmx:bB (2.41) BS04 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    9 6kmx:bB (2.41) BS05 F6C 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    10 6kmx:bB (2.41) BS06 SF4 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    11 6kmx:bB (2.41) BS07 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    12 6kmx:bB (2.41) BS08 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    13 6kmx:bB (2.41) BS09 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    14 6kmx:bB (2.41) BS10 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    15 6kmx:bB (2.41) BS11 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    16 6kmx:bB (2.41) BS12 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    17 6kmx:bB (2.41) BS13 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    18 6kmx:bB (2.41) BS14 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    19 6kmx:bB (2.41) BS15 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    20 6kmx:bB (2.41) BS16 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    21 6kmx:bB (2.41) BS17 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    22 6kmx:bB (2.41) BS18 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    23 6kmx:bB (2.41) BS19 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    24 6kmx:bB (2.41) BS20 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    25 6kmx:bB (2.41) BS21 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    26 6kmx:bB (2.41) BS22 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    27 6kmx:bB (2.41) BS23 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    28 6kmx:bB (2.41) BS24 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    29 6kmx:bB (2.41) BS25 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    30 6kmx:bB (2.41) BS26 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    31 6kmx:bB (2.41) BS27 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    32 6kmx:bB (2.41) BS28 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    33 6kmx:bB (2.41) BS29 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    34 6kmx:bB (2.41) BS30 F6C 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    35 6kmx:bB (2.41) BS31 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    36 6kmx:bB (2.41) BS32 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    37 6kmx:bB (2.41) BS33 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    38 6kmx:bB (2.41) BS34 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    39 6kmx:bB (2.41) BS35 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    40 6kmx:bB (2.41) BS36 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    41 6kmx:bB (2.41) BS37 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    42 6kmx:bB (2.41) BS38 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    43 6kmx:bB (2.41) BS39 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    44 6kmx:bB (2.41) BS40 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    45 6kmx:bB (2.41) BS41 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    46 6kmx:bB (2.41) BS42 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    47 6kmx:bB (2.41) BS43 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    48 6kmx:bB (2.41) BS44 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    49 6kmx:bB (2.41) BS45 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    50 6kmx:bB (2.41) BS46 CLA 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    51 6kmx:bB (2.41) BS47 PQN 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    52 6kmx:bB (2.41) BS48 F6C 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    53 6kmx:bI (2.41) BS01 CLA 1.97.1.12 GO:0009522 ... A0A1Z3HIL5 31932639
    54 6kmx:bL (2.41) BS04 CLA 1.97.1.12 GO:0009522 ... A0A1Z3HIQ7 31932639
    55 6kmx:bM (2.41) BS01 CLA N/A GO:0015979 ... N/A 31932639
    56 6kmx:bM (2.41) BS02 CLA N/A GO:0015979 ... N/A 31932639
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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