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BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7coy:bA (2.5) BS01 G9R 1.97.1.12 GO:0000287 ... B0C474 33879791
    2 7coy:bA (2.5) BS02 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    3 7coy:bA (2.5) BS03 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    4 7coy:bA (2.5) BS04 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    5 7coy:bA (2.5) BS05 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    6 7coy:bA (2.5) BS06 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    7 7coy:bA (2.5) BS07 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    8 7coy:bA (2.5) BS08 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    9 7coy:bA (2.5) BS09 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    10 7coy:bA (2.5) BS10 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    11 7coy:bA (2.5) BS11 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    12 7coy:bA (2.5) BS12 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    13 7coy:bA (2.5) BS13 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    14 7coy:bA (2.5) BS14 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    15 7coy:bA (2.5) BS15 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    16 7coy:bA (2.5) BS16 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    17 7coy:bA (2.5) BS17 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    18 7coy:bA (2.5) BS18 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    19 7coy:bA (2.5) BS19 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    20 7coy:bA (2.5) BS20 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    21 7coy:bA (2.5) BS21 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    22 7coy:bA (2.5) BS22 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    23 7coy:bA (2.5) BS23 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    24 7coy:bA (2.5) BS24 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    25 7coy:bA (2.5) BS25 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    26 7coy:bA (2.5) BS26 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    27 7coy:bA (2.5) BS27 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    28 7coy:bA (2.5) BS28 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    29 7coy:bA (2.5) BS29 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    30 7coy:bA (2.5) BS30 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    31 7coy:bA (2.5) BS31 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    32 7coy:bA (2.5) BS32 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    33 7coy:bA (2.5) BS33 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    34 7coy:bA (2.5) BS34 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    35 7coy:bA (2.5) BS35 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    36 7coy:bA (2.5) BS36 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    37 7coy:bA (2.5) BS37 PQN 1.97.1.12 GO:0000287 ... B0C474 33879791
    38 7coy:bA (2.5) BS38 PHO 1.97.1.12 GO:0000287 ... B0C474 33879791
    39 7coy:bA (2.5) BS39 SF4 1.97.1.12 GO:0000287 ... B0C474 33879791
    40 7coy:bA (2.5) BS40 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    41 7coy:bA (2.5) BS41 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    42 7coy:bA (2.5) BS42 PHO 1.97.1.12 GO:0000287 ... B0C474 33879791
    43 7coy:bA (2.5) BS43 CL7 1.97.1.12 GO:0000287 ... B0C474 33879791
    44 7coy:bB (2.5) BS02 G9R 1.97.1.12 GO:0000287 ... B0C475 33879791
    45 7coy:bB (2.5) BS03 CL7 1.97.1.12 GO:0000287 ... B0C475 33879791
    46 7coy:bB (2.5) BS04 CL7 1.97.1.12 GO:0000287 ... B0C475 33879791
    47 7coy:bB (2.5) BS05 CL7 1.97.1.12 GO:0000287 ... B0C475 33879791
    48 7coy:bB (2.5) BS06 CL7 1.97.1.12 GO:0000287 ... B0C475 33879791
    49 7coy:bJ (2.5) BS01 CL7 ? GO:0009522 ... B0C7S6 33879791
    50 7coy:bL (2.5) BS01 CL7 ? GO:0009522 ... B0C7S4 33879791
    51 7coy:bL (2.5) BS02 CL7 ? GO:0009522 ... B0C7S4 33879791
    52 7coy:bL (2.5) BS03 CL7 ? GO:0009522 ... B0C7S4 33879791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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