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BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6k61:a (2.37) BS44 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    2 6k61:a (2.37) BS45 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    3 6k61:a (2.37) BS46 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    4 6k61:a (2.37) BS47 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    5 6k61:a (2.37) BS48 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    6 6k61:a (2.37) BS49 CLA 1.97.1.12 GO:0000287 ... P58576 31595062
    7 6k61:b (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58565 31595062
    8 6k61:b (2.37) BS02 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    9 6k61:b (2.37) BS03 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    10 6k61:b (2.37) BS04 SF4 1.97.1.12 GO:0000287 ... P58565 31595062
    11 6k61:b (2.37) BS05 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    12 6k61:b (2.37) BS06 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    13 6k61:b (2.37) BS07 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    14 6k61:b (2.37) BS08 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    15 6k61:b (2.37) BS09 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    16 6k61:b (2.37) BS10 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    17 6k61:b (2.37) BS11 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    18 6k61:b (2.37) BS12 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    19 6k61:b (2.37) BS13 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    20 6k61:b (2.37) BS14 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    21 6k61:b (2.37) BS15 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    22 6k61:b (2.37) BS16 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    23 6k61:b (2.37) BS17 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    24 6k61:b (2.37) BS18 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    25 6k61:b (2.37) BS19 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    26 6k61:b (2.37) BS20 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    27 6k61:b (2.37) BS21 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    28 6k61:b (2.37) BS22 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    29 6k61:b (2.37) BS23 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    30 6k61:b (2.37) BS24 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    31 6k61:b (2.37) BS25 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    32 6k61:b (2.37) BS26 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    33 6k61:b (2.37) BS27 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    34 6k61:b (2.37) BS28 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    35 6k61:b (2.37) BS29 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    36 6k61:b (2.37) BS30 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    37 6k61:b (2.37) BS31 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    38 6k61:b (2.37) BS32 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    39 6k61:b (2.37) BS33 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    40 6k61:b (2.37) BS34 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    41 6k61:b (2.37) BS35 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    42 6k61:b (2.37) BS36 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    43 6k61:b (2.37) BS37 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    44 6k61:b (2.37) BS38 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    45 6k61:b (2.37) BS39 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    46 6k61:b (2.37) BS40 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    47 6k61:b (2.37) BS41 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    48 6k61:b (2.37) BS42 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    49 6k61:b (2.37) BS43 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    50 6k61:b (2.37) BS44 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    51 6k61:b (2.37) BS45 PQN 1.97.1.12 GO:0000287 ... P58565 31595062
    52 6k61:b (2.37) BS46 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    53 6k61:b (2.37) BS47 CLA 1.97.1.12 GO:0000287 ... P58565 31595062
    54 6k61:f (2.37) BS02 CLA ? GO:0009522 ... P58564 31595062
    55 6k61:f (2.37) BS03 CLA ? GO:0009522 ... P58564 31595062
    56 6k61:i (2.37) BS01 CLA ? GO:0009522 ... P58560 31595062
    57 6k61:i (2.37) BS02 CLA ? GO:0009522 ... P58560 31595062
    58 6k61:l (2.37) BS05 CLA ? GO:0009522 ... P58577 31595062
    59 6k61:m (2.37) BS01 CLA ? GO:0009522 ... Q8YNB0 31595062
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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