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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6dop:A
    (1.25)    		 BS02 >6dop:b (identical to 6dmn:b, 6dmv:b, 6do8:b, 6do9:b, 6doa:b, 6dob:b, 6doc:b, 6dod:b, 6doe:b, 6dof:b, 6dog:b, 6doh:b, 6doi:b, 6doj:b, 6dok:b, 6dol:b, 6dom:b, 6don:b, 6doo:b, 6doq:b, 6dor:b, 6dos:b, 6dot:b, 6dou:b, 6dov:b, 6dow:b, 6dox:b, 6doz:b, 6dp0:b, 6dp1:b, 6dp2:b, 6dp3:b, 6dp4:b, 6dp5:b, 6dp6:b, 6dp7:b, 6dp8:b, 6dp9:b, 6dpa:b, 6dpb:b, 6dpc:b, 6dpd:b, 6dpe:b, 6dpf:b, 6dpg:b, 6dph:b, 6dpi:b, 6dpj:b, 6dpk:b, 6dpl:b, 6dpm:b, 6dpn:b, 6dpo:b, 6dpp:b, 4jzv:C, 6n6g:D, 4x4r:H)
    cg
..
    		 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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