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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jjr:I (2.8) BS16 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    2 8jjr:a (2.8) BS01 CLA N/A GO:0009579 ... N/A 38493166
    3 8jjr:a (2.8) BS02 CLA N/A GO:0009579 ... N/A 38493166
    4 8jjr:a (2.8) BS03 CLA N/A GO:0009579 ... N/A 38493166
    5 8jjr:a (2.8) BS04 CLA N/A GO:0009579 ... N/A 38493166
    6 8jjr:a (2.8) BS05 CLA N/A GO:0009579 ... N/A 38493166
    7 8jjr:a (2.8) BS06 CLA N/A GO:0009579 ... N/A 38493166
    8 8jjr:a (2.8) BS07 CLA N/A GO:0009579 ... N/A 38493166
    9 8jjr:a (2.8) BS08 CLA N/A GO:0009579 ... N/A 38493166
    10 8jjr:a (2.8) BS09 CLA N/A GO:0009579 ... N/A 38493166
    11 8jjr:a (2.8) BS10 CLA N/A GO:0009579 ... N/A 38493166
    12 8jjr:a (2.8) BS11 CLA N/A GO:0009579 ... N/A 38493166
    13 8jjr:a (2.8) BS12 CLA N/A GO:0009579 ... N/A 38493166
    14 8jjr:a (2.8) BS13 CLA N/A GO:0009579 ... N/A 38493166
    15 8jjr:a (2.8) BS14 CLA N/A GO:0009579 ... N/A 38493166
    16 8jjr:a (2.8) BS15 CLA N/A GO:0009579 ... N/A 38493166
    17 8jjr:a (2.8) BS16 CLA N/A GO:0009579 ... N/A 38493166
    18 8jjr:a (2.8) BS17 CLA N/A GO:0009579 ... N/A 38493166
    19 8jjr:a (2.8) BS18 CLA N/A GO:0009579 ... N/A 38493166
    20 8jjr:a (2.8) BS19 CLA N/A GO:0009579 ... N/A 38493166
    21 8jjr:a (2.8) BS20 CLA N/A GO:0009579 ... N/A 38493166
    22 8jjr:a (2.8) BS21 CLA N/A GO:0009579 ... N/A 38493166
    23 8jjr:a (2.8) BS22 CLA N/A GO:0009579 ... N/A 38493166
    24 8jjr:a (2.8) BS23 CLA N/A GO:0009579 ... N/A 38493166
    25 8jjr:a (2.8) BS24 CLA N/A GO:0009579 ... N/A 38493166
    26 8jjr:a (2.8) BS25 CLA N/A GO:0009579 ... N/A 38493166
    27 8jjr:a (2.8) BS26 CLA N/A GO:0009579 ... N/A 38493166
    28 8jjr:a (2.8) BS27 CLA N/A GO:0009579 ... N/A 38493166
    29 8jjr:a (2.8) BS28 CLA N/A GO:0009579 ... N/A 38493166
    30 8jjr:a (2.8) BS29 CLA N/A GO:0009579 ... N/A 38493166
    31 8jjr:a (2.8) BS30 CLA N/A GO:0009579 ... N/A 38493166
    32 8jjr:a (2.8) BS31 CLA N/A GO:0009579 ... N/A 38493166
    33 8jjr:a (2.8) BS32 CLA N/A GO:0009579 ... N/A 38493166
    34 8jjr:a (2.8) BS33 CLA N/A GO:0009579 ... N/A 38493166
    35 8jjr:a (2.8) BS34 PQN N/A GO:0009579 ... N/A 38493166
    36 8jjr:a (2.8) BS35 CLA N/A GO:0009579 ... N/A 38493166
    37 8jjr:a (2.8) BS36 SF4 N/A GO:0009579 ... N/A 38493166
    38 8jjr:a (2.8) BS37 CLA N/A GO:0009579 ... N/A 38493166
    39 8jjr:a (2.8) BS38 CLA N/A GO:0009579 ... N/A 38493166
    40 8jjr:a (2.8) BS39 CLA N/A GO:0009579 ... N/A 38493166
    41 8jjr:a (2.8) BS40 CLA N/A GO:0009579 ... N/A 38493166
    42 8jjr:a (2.8) BS41 CLA N/A GO:0009579 ... N/A 38493166
    43 8jjr:a (2.8) BS42 CLA N/A GO:0009579 ... N/A 38493166
    44 8jjr:a (2.8) BS43 CLA N/A GO:0009579 ... N/A 38493166
    45 8jjr:a (2.8) BS44 CLA N/A GO:0009579 ... N/A 38493166
    46 8jjr:a (2.8) BS45 CLA N/A GO:0009579 ... N/A 38493166
    47 8jjr:b (2.8) BS03 CLA N/A GO:0009579 ... N/A 38493166
    48 8jjr:b (2.8) BS04 CLA N/A GO:0009579 ... N/A 38493166
    49 8jjr:b (2.8) BS05 CLA N/A GO:0009579 ... N/A 38493166
    50 8jjr:b (2.8) BS06 CLA N/A GO:0009579 ... N/A 38493166
    51 8jjr:b (2.8) BS07 CLA N/A GO:0009579 ... N/A 38493166
    52 8jjr:b (2.8) BS08 SF4 N/A GO:0009579 ... N/A 38493166
    53 8jjr:f (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    54 8jjr:f (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    55 8jjr:j (2.8) BS01 CLA N/A N/A A0AA36N211 38493166
    56 8jjr:l (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N262 38493166
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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