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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7ena:6
    (4.07)    		 BS01 >7ena:Y (identical to 7egb:Y, 7enc:Y)
    ctgctcggctcgagtgttcgatcgcgactgaggacgaacgcgcccccacc
cccttttataggcgccctt
    		 5.6.2.4 GO:0000112 ... P19447 33958484
    2 7ena:BA
    (4.07)    		 BS02 >7ena:Y (identical to 7egb:Y, 7enc:Y)
    ctgctcggctcgagtgttcgatcgcgactgaggacgaacgcgcccccacc
cccttttataggcgccctt
    		 2.3.1.48 GO:0000776 ... Q00403 33958484
    3 7ena:DA
    (4.07)    		 BS02 >7ena:Y (identical to 7egb:Y, 7enc:Y)
    ctgctcggctcgagtgttcgatcgcgactgaggacgaacgcgcccccacc
cccttttataggcgccctt
    		 2.3.1.48
    2.7.11.1    		 GO:0000122 ... P21675 33958484
    4 7ena:DP
    (4.07)    		 BS02 >7ena:Y (identical to 7egb:Y, 7enc:Y)
    ctgctcggctcgagtgttcgatcgcgactgaggacgaacgcgcccccacc
cccttttataggcgccctt
    		 ? GO:0000785 ... P20226 33958484
    5 7ena:DQ
    (4.07)    		 BS01 >7ena:Y (identical to 7egb:Y, 7enc:Y)
    ctgctcggctcgagtgttcgatcgcgactgaggacgaacgcgcccccacc
cccttttataggcgccctt
    		 N/A GO:0005672 ... N/A 33958484
    6 7ena:FB
    (4.07)    		 BS02 >7ena:Y (identical to 7egb:Y, 7enc:Y)
    ctgctcggctcgagtgttcgatcgcgactgaggacgaacgcgcccccacc
cccttttataggcgccctt
    		 3.6.4.12 GO:0003677 ... P13984 33958484
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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