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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6zse:6
    (5.0)    		 BS02 >6zse:XB (identical to 7og4:XB, 6zs9:XB, 6zsa:XB, 6zsb:XB, 6zsc:XB, 6zsd:XB, 6zsg:XB)
    agaguguagcuuaaacaaagcacccaacuuacacuuaggagauucaauug
acgcucuga
<<<<<...<<<.......>>>.<<.<<.......>>.>>....<<<<>>>
>.>>>>>..
    		 ? GO:0005515 ... Q96DV4 32812867
    2 6zse:8
    (5.0)    		 BS01 >6zse:XB (identical to 7og4:XB, 6zs9:XB, 6zsa:XB, 6zsb:XB, 6zsc:XB, 6zsd:XB, 6zsg:XB)
    agaguguagcuuaaacaaagcacccaacuuacacuuaggagauucaauug
acgcucuga
<<<<<...<<<.......>>>.<<.<<.......>>.>>....<<<<>>>
>.>>>>>..
    		 ? GO:0003723 ... Q9NQ50 32812867
    3 6zse:XP
    (5.0)    		 BS02 >6zse:XB (identical to 7og4:XB, 6zs9:XB, 6zsa:XB, 6zsb:XB, 6zsc:XB, 6zsd:XB, 6zsg:XB)
    agaguguagcuuaaacaaagcacccaacuuacacuuaggagauucaauug
acgcucuga
<<<<<...<<<.......>>>.<<.<<.......>>.>>....<<<<>>>
>.>>>>>..
    		 ? GO:0003723 ... Q9H0U6 32812867
    4 6zse:f
    (5.0)    		 BS02 >6zse:XB (identical to 7og4:XB, 6zs9:XB, 6zsa:XB, 6zsb:XB, 6zsc:XB, 6zsd:XB, 6zsg:XB)
    agaguguagcuuaaacaaagcacccaacuuacacuuaggagauucaauug
acgcucuga
<<<<<...<<<.......>>>.<<.<<.......>>.>>....<<<<>>>
>.>>>>>..
    		 ? GO:0005515 ... Q96GC5 32812867
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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