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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7pub:Cn
    (3.7)    		 BS02 >7pub:UG (identical to 3a6p:B, 3a6p:G, 5bw8:Z, 2cho:C, 2cho:D, 6h8k:e, 8hf7:D, 1seb:C, 1seb:G, 8sq0:C, 8sq0:D, 8sql:B, 8tj5:k, 8tj5:l, 6vzu:M, 5yu6:E, 5yu6:F)
    AAAAAAAAAAAAA
    		 ? GO:0005739 ... Q57VQ9 35042777
    2 7pub:Fi
    (3.7)    		 BS03 >7pub:UG (identical to 3a6p:B, 3a6p:G, 5bw8:Z, 2cho:C, 2cho:D, 6h8k:e, 8hf7:D, 1seb:C, 1seb:G, 8sq0:C, 8sq0:D, 8sql:B, 8tj5:k, 8tj5:l, 6vzu:M, 5yu6:E, 5yu6:F)
    AAAAAAAAAAAAA
    		 ? GO:0005739 ... Q57ZP1 35042777
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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