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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7elm:K
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? N/A A0A3A8DDU9 35411005
    2 7elm:L
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? GO:0005515 ... Q02MM0 35411005
    3 7elm:M
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? GO:0005515 ... Q02MM1 35411005
    4 7elm:N
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? GO:0005515 ... Q02MM1 35411005
    5 7elm:O
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? GO:0005515 ... Q02MM1 35411005
    6 7elm:P
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? GO:0005515 ... Q02MM1 35411005
    7 7elm:Q
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? GO:0005515 ... Q02MM1 35411005
    8 7elm:R
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 ? GO:0005515 ... Q02MM1 35411005
    9 7elm:S
    (2.88)    		 BS01 >7elm:T (identical to 6b44:M, 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M)
    cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugcc
guguaggcag
.............................................<<<<<
.....>>>>>
    		 3.1.-.- GO:0003723 ... Q02MM2 35411005
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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