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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1zqp:A
    (2.8)    		 BS01 >1zqp:T (identical to 8ica:T, 8icb:T, 8icc:T, 8ice:T, 8icf:T, 8icg:T, 8ich:T, 8ici:T, 8icj:T, 8ick:T, 8icl:T, 8icm:T, 8icn:T, 8ico:T, 8icp:T, 8icq:T, 8icr:T, 8ics:T, 8ict:T, 8icu:T, 8icv:T, 8icw:T, 8icx:T, 8icy:T, 8icz:T, 9ica:T, 9icb:T, 9icc:T, 9ice:T, 9icf:T, 9icg:T, 9ich:T, 9ici:T, 9icj:T, 9icv:T, 1zqa:T, 1zqb:T, 1zqc:T, 1zqd:T, 1zqe:T, 1zqf:T, 1zqg:T, 1zqh:T, 1zqi:T, 1zqj:T, 1zqk:T, 1zql:T, 1zqm:T, 1zqn:T, 1zqo:T, 1zqq:T, 1zqr:T, 1zqs:T, 1zqt:T)
    cattagaa
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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