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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2zl4:E
    (2.5)    		 BS01 >2zl4:S (identical to 6brs:E, 4c2g:B, 6dqq:B, 1fip:C, 1fip:D, 3gnn:D, 3gnn:E, 4ka7:C, 1ltx:P, 4nge:C, 6npo:C, 7p0m:I, 7p0m:J, 7p0m:M, 7p0m:H, 7p0m:L, 7p0m:K, 7pt6:1, 7pt6:A, 7pt7:1, 7pzn:M, 3qo6:E, 3qo6:H, 3qo6:I, 1rqf:M, 1rqf:N, 1rqf:T, 3rqr:U, 6sh2:DDD, 5t63:C, 5wql:E, 5y28:G, 2zl2:S, 2zl4:O, 2zl4:P, 2zl4:Q, 2zl4:R, 2zl4:T, 2zl4:U, 2zl4:V, 2zl4:W, 2zl4:X, 2zl4:Y, 2zl4:Z, 2zl4:1, 2zl4:2)
    AAAA
    		 3.4.21.92 GO:0004176 ... P56156 18468623
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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