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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 7rbe:A
    (1.89)
    BS02 >7rbe:P (identical to 5bol:P, 5bom:P, 1bpx:P, 1bpy:P, 5bpc:P, 6bte:P, 6btf:P, 3c2k:P, 3c2l:P, 3c2m:P, 6cr3:P, 6cr4:P, 6cr5:P, 6cr6:P, 6cr7:P, 6cr8:P, 6cr9:P, 6crb:P, 6crc:P, 6cti:P, 6ctj:P, 6ctk:P, 6ctl:P, 6ctm:P, 6ctn:P, 6cto:P, 6ctp:P, 5dff:P, 6dia:P, 6dic:P, 4do9:P, 4doa:P, 4dob:P, 4doc:P, 4f5n:P, 4f5p:P, 4f5q:P, 4f5r:P, 4f5r:G, 2fmp:P, 2fmq:C, 2fms:P, 6g2q:P, 3gdx:P, 2i9g:P, 2iso:P, 2isp:P, 3isb:P, 3isc:P, 3isd:P, 5j0p:P, 5j0w:P, 5j2a:P, 5j2d:P, 5j2i:P, 3jpn:P, 3jpo:P, 3jpp:P, 3jpq:P, 3jpr:P, 3jps:P, 3jpt:P, 4jwm:P, 4jwn:P, 7k96:P, 8ka3:C, 8ka5:C, 4kld:P, 3lk9:P, 4lvs:P, 4m9g:P, 4m9h:P, 4m9j:P, 4m9l:P, 4m9n:P, 3mby:P, 1mq3:P, 6mr7:P, 6mr8:P, 6n2r:P, 6n2s:P, 6n2t:P, 6nkr:P, 6nks:P, 6nkt:P, 6p93:P, 6p94:P, 4phe:P, 4php:P, 4ppx:P, 2pxi:P, 4r63:P, 4r64:P, 4r65:P, 4r66:P, 7rbf:P, 7rbg:P, 7rbh:P, 3rjj:P, 3rjk:P, 4rpx:P, 4rq3:P, 4rt2:P, 4rt3:P, 5tb8:P, 5tb9:P, 5tba:P, 5tbb:P, 5tbc:P, 3tfr:P, 3tfs:P, 5u2r:P, 5u2s:P, 5u2t:P, 5u8g:P, 5u8h:P, 5u8i:P, 4uaw:P, 4ub4:P, 4ub5:P, 4ubc:P, 5ugp:P, 6uok:C, 6uok:P, 6uol:P, 8vf8:P, 8vfa:P, 6w0q:P, 6w2p:P, 6w3l:D, 6w3q:D, 6w3u:D, 6w43:P, 6w4i:P, 6w4i:E, 5wn0:D, 5wn3:D, 5wn4:D, 5wn5:D, 5wnx:P, 5wny:P, 5wnz:P, 5wo0:P)
    gctgatgcgc
    2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 35238634

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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