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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 7ota:A
    (3.0)
    BS02 >7ota:P (identical to 7ahx:P, 7ahx:F, 7aid:P, 7aid:F, 7aif:P, 7aif:F, 7aig:P, 7aig:F, 7aii:P, 7aii:F, 7aij:P, 7aij:F, 6amo:P, 6amo:F, 6an2:P, 6an2:F, 6an8:P, 6an8:F, 6anq:P, 6anq:F, 6asw:P, 6asw:F, 6avm:P, 6avm:F, 6avt:P, 6avt:F, 3jsm:P, 3jyt:P, 7ot6:F, 7ot6:P, 7ota:F, 7otk:F, 7otk:P, 7otn:F, 7otn:P, 7otx:F, 7otx:P, 7otz:F, 7otz:P, 7out:F, 7out:P, 7oxq:F, 7oz5:F, 4r5p:P, 4r5p:F, 1t05:P, 5txl:P, 5txl:F, 5txm:P, 5txm:F, 5txn:P, 5txn:F, 5txo:P, 5txo:F, 5txp:P, 5txp:F)
    cagtccctgttcgggcgccg
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 34425311

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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