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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    RNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 6j6q:A
    (3.7)
    BS05 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000244 ... P33334 30879786
    2 6j6q:I
    (3.7)
    BS02 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000384 ... P53277 30879786
    3 6j6q:P
    (3.7)
    BS03 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000350 ... P28004 30879786
    4 6j6q:Q
    (3.7)
    BS02 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000398 ... P38241 30879786
    5 6j6q:R
    (3.7)
    BS03 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000387 ... Q12046 30879786
    6 6j6q:S
    (3.7)
    BS03 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000398 ... Q03772 30879786
    7 6j6q:a
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000398 ... P40567 30879786
    8 6j6q:c
    (3.7)
    BS03 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000350 ... Q03654 30879786
    9 6j6q:e
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000243 ... Q06217 30879786
    10 6j6q:n
    (3.7)
    BS02 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000348 ... P40968 30879786
    11 6j6q:s
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000243 ... P40018 30879786
    12 6j6q:u
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000243 ... Q12330 30879786
    13 6j6q:v
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000349 ... Q04048 30879786
    14 6j6q:w
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000243 ... P54999 30879786
    15 6j6q:x
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000243 ... P40204 30879786
    16 6j6q:y
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000243 ... P43321 30879786
    17 6j6q:z
    (3.7)
    BS01 >6j6q:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
    caguguaacaacuaaugaccucagaggcucauauuuguuacaauacacau
    uuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucg
    cgacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucu
    cuucccguuc
    ..................................................
    ...<<<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>........
    ...................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<
    <<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>
    >>>>>>>>>.
    ? GO:0000243 ... Q02260 30879786

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417