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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8y6o:G
    (3.38)    		 BS02 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000244 ... O94906 38484052
    2 8y6o:L
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000244 ... Q8WWY3 38484052
    3 8y6o:N
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000244 ... O43395 38484052
    4 8y6o:O
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000398 ... P55769 38484052
    5 8y6o:R
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000398 ... Q86UT8 38484052
    6 8y6o:X
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000398 ... Q9BV90 38484052
    7 8y6o:h
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000387 ... P14678 38484052
    8 8y6o:i
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000243 ... P62314 38484052
    9 8y6o:j
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000245 ... P62316 38484052
    10 8y6o:k
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000243 ... P62318 38484052
    11 8y6o:l
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000245 ... P62304 38484052
    12 8y6o:m
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000387 ... P62306 38484052
    13 8y6o:n
    (3.38)    		 BS01 >8y6o:J
    aaccauccuuuucuugggguugcuacuguccaaugagcgcauagugaggg
caguacugcuaaccgcaucaacuagagcgcuuuauuuuggugcaauuuuu
ggaaaaau
.......................<<<<<<<......<<.....>>...>>
>>>>>.........<<<<<<<.<<<<<..>>>>>..>>>>>>>.......
........
    		 ? GO:0000245 ... P62308 38484052
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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