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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8skt:A
    (2.69)    		 BS04 >8skt:J (identical to 8eae:E, 8eae:F, 8eae:I, 8eae:J, 8ecc:E, 8ecc:F, 8ecc:I, 8ecc:J, 8g10:E, 8g10:F, 8g10:I, 8g10:J, 8g1j:E, 8g1j:F, 8g1j:I, 8g1j:J, 8g23:E, 8g23:F, 8g23:I, 8g23:J, 8g2p:E, 8g2p:F, 8g2p:I, 8g2p:J, 8g2q:E, 8g2q:F, 8g2q:I, 8g2q:J, 8gim:E, 8gim:F, 8gim:I, 8gim:J, 8gin:E, 8gin:F, 8gin:I, 8gin:J, 8gio:E, 8gio:F, 8gio:I, 8gio:J, 8gip:E, 8gip:F, 8gip:I, 8gip:J, 8gir:E, 8gir:F, 8gir:I, 8gir:J, 8gis:E, 8gis:F, 8gis:I, 8gis:J, 8git:E, 8git:F, 8git:I, 8git:J, 4ley:E, 4ley:F, 4ley:G, 4ley:H, 4ley:I, 4ley:J, 4ley:K, 4ley:L, 4lez:E, 4lez:F, 4lez:I, 4lez:J, 8sj0:E, 8sj0:F, 8sj0:I, 8sj0:J, 8sj1:E, 8sj1:F, 8sj1:I, 8sj1:J, 8sj2:E, 8sj2:F, 8sj2:I, 8sj2:J, 8skt:E, 8skt:F, 8skt:I, 7utt:E, 7utt:F, 7utt:I, 7utt:J, 7uux:E, 7uux:F, 7uux:I, 7uux:J, 7uxw:E, 7uxw:F, 7uxw:I, 7uxw:J, 7uyq:E, 7uyq:F, 7uyq:I, 7uyq:J, 7uyz:E, 7uyz:F, 7uyz:I, 7uyz:J, 7uzr:E, 7uzr:F, 7uzr:I, 7uzr:J, 7v0c:E, 7v0c:F, 7v0c:I, 7v0c:J, 7v0r:E, 7v0r:F, 7v0r:I, 7v0r:J, 7v0w:E, 7v0w:F, 7v0w:I, 7v0w:J)
    atctgtacatgtacagat
    		 2.7.7.86 N/A Q8C6L5 38740774
    2 8skt:C
    (2.69)    		 BS03 >8skt:J (identical to 8eae:E, 8eae:F, 8eae:I, 8eae:J, 8ecc:E, 8ecc:F, 8ecc:I, 8ecc:J, 8g10:E, 8g10:F, 8g10:I, 8g10:J, 8g1j:E, 8g1j:F, 8g1j:I, 8g1j:J, 8g23:E, 8g23:F, 8g23:I, 8g23:J, 8g2p:E, 8g2p:F, 8g2p:I, 8g2p:J, 8g2q:E, 8g2q:F, 8g2q:I, 8g2q:J, 8gim:E, 8gim:F, 8gim:I, 8gim:J, 8gin:E, 8gin:F, 8gin:I, 8gin:J, 8gio:E, 8gio:F, 8gio:I, 8gio:J, 8gip:E, 8gip:F, 8gip:I, 8gip:J, 8gir:E, 8gir:F, 8gir:I, 8gir:J, 8gis:E, 8gis:F, 8gis:I, 8gis:J, 8git:E, 8git:F, 8git:I, 8git:J, 4ley:E, 4ley:F, 4ley:G, 4ley:H, 4ley:I, 4ley:J, 4ley:K, 4ley:L, 4lez:E, 4lez:F, 4lez:I, 4lez:J, 8sj0:E, 8sj0:F, 8sj0:I, 8sj0:J, 8sj1:E, 8sj1:F, 8sj1:I, 8sj1:J, 8sj2:E, 8sj2:F, 8sj2:I, 8sj2:J, 8skt:E, 8skt:F, 8skt:I, 7utt:E, 7utt:F, 7utt:I, 7utt:J, 7uux:E, 7uux:F, 7uux:I, 7uux:J, 7uxw:E, 7uxw:F, 7uxw:I, 7uxw:J, 7uyq:E, 7uyq:F, 7uyq:I, 7uyq:J, 7uyz:E, 7uyz:F, 7uyz:I, 7uyz:J, 7uzr:E, 7uzr:F, 7uzr:I, 7uzr:J, 7v0c:E, 7v0c:F, 7v0c:I, 7v0c:J, 7v0r:E, 7v0r:F, 7v0r:I, 7v0r:J, 7v0w:E, 7v0w:F, 7v0w:I, 7v0w:J)
    atctgtacatgtacagat
    		 2.7.7.86 N/A Q8C6L5 38740774
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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