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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6kiv:A
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P84233 31485071
    2 6kiv:B
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P62799 31485071
    3 6kiv:C
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P06897 31485071
    4 6kiv:D
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P02281 31485071
    5 6kiv:E
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P84233 31485071
    6 6kiv:F
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P62799 31485071
    7 6kiv:G
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P06897 31485071
    8 6kiv:H
    (4.0)    		 BS02 >6kiv:J (identical to 6buz:J, 7e8i:J, 7ea5:J, 9fh9:J, 8grm:J, 6j99:J, 8jbx:J, 7jo9:I, 7joa:I, 6kiu:J, 6kiw:J, 6kix:J, 6kiz:J, 7mbm:O, 4r8p:J, 7u51:J, 7u52:J, 8v25:J, 8v26:J, 8v27:J, 8v28:J, 7xct:J)
    tcggatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P02281 31485071
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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