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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7x3t:A
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P84233 38177688
    2 7x3t:B
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P62799 38177688
    3 7x3t:C
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P06897 38177688
    4 7x3t:D
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P02281 38177688
    5 7x3t:E
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P84233 38177688
    6 7x3t:F
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P62799 38177688
    7 7x3t:G
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P06897 38177688
    8 7x3t:H
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P02281 38177688
    9 7x3t:K
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P84233 38177688
    10 7x3t:L
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P62799 38177688
    11 7x3t:M
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P06897 38177688
    12 7x3t:N
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P02281 38177688
    13 7x3t:O
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P84233 38177688
    14 7x3t:Q
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P06897 38177688
    15 7x3t:R
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 ? GO:0000786 ... P02281 38177688
    16 7x3t:V
    (5.4)    		 BS01 >7x3t:I
    tggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcctgaagct
tgtcgagaagctcgacctggagaatcccggtgccgaggccgctcaattgg
tcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgc
gttttaaccgccaaggggattactccctagtctccaggcacgtgtcagat
atatacatcctgagcgtaatcatggtcatagctgtttcc
    		 3.6.4.- GO:0000182 ... P38144 38177688
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417