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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7e81:Ca
    (4.5)    		 BS01 >7e81:GE (identical to 7aoi:UE, 9cc0:G, 7cgo:GE, 2chn:C, 2chn:D, 6f2r:X, 6f2r:Y, 7fhk:B, 7fhk:D, 7fhl:B, 7fhl:D, 8iuf:A, 8j9h:U1, 8j9h:U2, 8j9i:U1, 8j9i:U2, 8j9j:U1, 8j9j:U2, 7krz:G, 7ksm:G, 6po1:S, 6pp5:S, 6q3g:RD, 6q3g:RJ, 6q3g:RK, 6q3g:RP, 6q3g:RS, 4xvu:g)
    AAAAAAAAAAAA
    		 ? GO:0003774 ... P15928 33882274
    2 7e81:Fh
    (4.5)    		 BS01 >7e81:GE (identical to 7aoi:UE, 9cc0:G, 7cgo:GE, 2chn:C, 2chn:D, 6f2r:X, 6f2r:Y, 7fhk:B, 7fhk:D, 7fhl:B, 7fhl:D, 8iuf:A, 8j9h:U1, 8j9h:U2, 8j9i:U1, 8j9i:U2, 8j9j:U1, 8j9j:U2, 7krz:G, 7ksm:G, 6po1:S, 6pp5:S, 6q3g:RD, 6q3g:RJ, 6q3g:RK, 6q3g:RP, 6q3g:RS, 4xvu:g)
    AAAAAAAAAAAA
    		 ? GO:0003774 ... P15928 33882274
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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