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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5djc:A
    (2.1)    		 BS02 >5djc:F (identical to 5di8:C, 5dj0:C, 5dj2:C, 5dj6:C, 5dj8:C, 5dja:C, 5djc:C, 5djd:C, 5djx:C, 5djx:F, 5djy:C, 5djz:C, 5dk0:C, 5dk2:C, 1dn2:E, 1dn2:F, 5dvk:B, 5dvl:B, 5dvm:B, 5dvn:B, 6ifj:C, 6ifj:D, 5nsc:C)
    DCAWHLGELVWCT
    		 ? N/A P01857 26996964
    2 5djc:D
    (2.1)    		 BS01 >5djc:F (identical to 5di8:C, 5dj0:C, 5dj2:C, 5dj6:C, 5dj8:C, 5dja:C, 5djc:C, 5djd:C, 5djx:C, 5djx:F, 5djy:C, 5djz:C, 5dk0:C, 5dk2:C, 1dn2:E, 1dn2:F, 5dvk:B, 5dvl:B, 5dvm:B, 5dvn:B, 6ifj:C, 6ifj:D, 5nsc:C)
    DCAWHLGELVWCT
    		 ? N/A P01857 26996964
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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