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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6j6n:A
    (3.86)    		 BS04 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000244 ... P33334 30879786
    2 6j6n:H
    (3.86)    		 BS02 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000350 ... P21374 30879786
    3 6j6n:I
    (3.86)    		 BS01 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000384 ... P53277 30879786
    4 6j6n:P
    (3.86)    		 BS02 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000350 ... P28004 30879786
    5 6j6n:Q
    (3.86)    		 BS01 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000398 ... P38241 30879786
    6 6j6n:R
    (3.86)    		 BS02 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000387 ... Q12046 30879786
    7 6j6n:S
    (3.86)    		 BS02 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000398 ... Q03772 30879786
    8 6j6n:T
    (3.86)    		 BS02 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000282 ... P25337 30879786
    9 6j6n:c
    (3.86)    		 BS01 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000350 ... Q03654 30879786
    10 6j6n:d
    (3.86)    		 BS01 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000245 ... Q12309 30879786
    11 6j6n:n
    (3.86)    		 BS01 >6j6n:E (identical to 7dco:F, 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6q:E, 5wsg:E, 5ylz:D)
    guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacag
agaugaucagcaguuccccugcauaaggaugaaccguuuuacaaagagau
uua
<<<<<<<<<<.....>>>>>>>>>>.........................
............<<<..<<<.....>>>...>>>................
...
    		 ? GO:0000348 ... P40968 30879786
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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