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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 6gch:F
    (2.1)
    BS01 >6gch:E (identical to 1ab9:A, 1afq:A, 1cho:E, 4cha:E, 1gct:A, 2gch:E, 2gct:A, 3gch:A, 3gct:E, 4gch:E, 5gch:E, 7gch:E, 8gch:E, 1gg6:A, 1ggd:A, 1gha:E, 1ghb:E, 1gmc:E, 1gmd:E, 1gmh:E, 2gmt:A, 1hja:A, 2p8o:A, 5r42:A, 5r43:A, 5r44:A, 5r45:A, 5r46:A, 5r47:A, 5r48:A, 5r49:A, 5r4a:A, 5r4b:A, 5r4c:A, 5r4d:A, 1vgc:A, 2vgc:A, 3vgc:A, 4vgc:A, 1yph:A)
    CGVPAIQPVL
    3.4.21.1 GO:0004252 ... P00766 2271520
    2 6gch:G
    (2.1)
    BS01 >6gch:E (identical to 1ab9:A, 1afq:A, 1cho:E, 4cha:E, 1gct:A, 2gch:E, 2gct:A, 3gch:A, 3gct:E, 4gch:E, 5gch:E, 7gch:E, 8gch:E, 1gg6:A, 1ggd:A, 1gha:E, 1ghb:E, 1gmc:E, 1gmd:E, 1gmh:E, 2gmt:A, 1hja:A, 2p8o:A, 5r42:A, 5r43:A, 5r44:A, 5r45:A, 5r46:A, 5r47:A, 5r48:A, 5r49:A, 5r4a:A, 5r4b:A, 5r4c:A, 5r4d:A, 1vgc:A, 2vgc:A, 3vgc:A, 4vgc:A, 1yph:A)
    CGVPAIQPVL
    3.4.21.1 GO:0004252 ... P00766 2271520

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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