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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2f9p:A
    (2.3)    		 BS01 >2f9p:E (identical to 2agi:A, 6bkj:F, 6bkj:G, 6bkj:H, 6bkj:I, 3bpm:D, 3bpm:C, 7ein:C, 7ein:D, 2f9n:E, 2f9n:F, 2f9n:G, 2f9n:H, 2f9p:F, 2f9p:G, 2f9p:H, 2fo5:E, 2fo5:F, 2fo5:G, 2fo5:H, 1jrs:B, 1jrt:B, 7mrr:B, 5ms4:E, 5ms4:F, 5ms4:G, 5ms4:H, 7nev:B, 2nqa:D, 2nqa:E, 2p0r:D, 2p0r:E, 1pop:B, 2psx:B, 2psy:B, 1tl9:B, 6xch:C)
    LLR
    		 3.4.21.59 GO:0004252 ... Q15661 16414069
    2 2f9p:D
    (2.3)    		 BS01 >2f9p:E (identical to 2agi:A, 6bkj:F, 6bkj:G, 6bkj:H, 6bkj:I, 3bpm:D, 3bpm:C, 7ein:C, 7ein:D, 2f9n:E, 2f9n:F, 2f9n:G, 2f9n:H, 2f9p:F, 2f9p:G, 2f9p:H, 2fo5:E, 2fo5:F, 2fo5:G, 2fo5:H, 1jrs:B, 1jrt:B, 7mrr:B, 5ms4:E, 5ms4:F, 5ms4:G, 5ms4:H, 7nev:B, 2nqa:D, 2nqa:E, 2p0r:D, 2p0r:E, 1pop:B, 2psx:B, 2psy:B, 1tl9:B, 6xch:C)
    LLR
    		 3.4.21.59 GO:0004252 ... Q15661 16414069
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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