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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5d4b:A
    (2.66)    		 BS02 >5d4b:E (identical to 5d46:B, 5d46:E, 5d49:B, 5d4b:C, 5d4b:D, 6go6:E, 6go7:F, 6go7:G, 4qz8:D, 4qz8:U, 4qz9:D, 4qz9:U, 4qza:D, 4qza:U, 4qzb:D, 4qzb:U, 4qzc:D, 4qzc:U, 4qzd:D, 4qze:D, 4qze:U, 4qzf:D, 4qzf:U, 4qzg:D, 4qzg:U, 4qzh:D, 4qzh:U, 4qzi:D, 4qzi:U)
    aaaaac
    		 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 27499438
    2 5d4b:B
    (2.66)    		 BS02 >5d4b:E (identical to 5d46:B, 5d46:E, 5d49:B, 5d4b:C, 5d4b:D, 6go6:E, 6go7:F, 6go7:G, 4qz8:D, 4qz8:U, 4qz9:D, 4qz9:U, 4qza:D, 4qza:U, 4qzb:D, 4qzb:U, 4qzc:D, 4qzc:U, 4qzd:D, 4qze:D, 4qze:U, 4qzf:D, 4qzf:U, 4qzg:D, 4qzg:U, 4qzh:D, 4qzh:U, 4qzi:D, 4qzi:U)
    aaaaac
    		 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 27499438
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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