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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4s0n:A
    (1.501)    		 BS01 >4s0n:E (identical to 4a75:D, 4a75:H, 8dqx:I, 2es2:B, 5fhe:C, 5fte:D, 8gms:S, 8gmt:S, 8gmu:S, 2gxa:M, 2hax:C, 2hax:D, 8hwa:S, 8hwb:S, 8hwf:S, 8hwg:S, 8hwh:S, 5ip3:F, 8jpx:E, 8jpx:F, 3kqk:C, 3kqk:D, 3kql:E, 3kql:F, 3kqn:E, 7lar:G, 4ljr:C, 1mje:C, 2mna:B, 5o6d:C, 5o6d:D, 7otj:C, 7otj:D, 4oww:L, 6s3h:D, 6s3n:C, 8xj7:X, 8xj8:X, 7ywa:S)
    tttttt
    		 2.3.2.27
    3.6.4.-    		 GO:0003676 ... Q14527 26051180 PDBbind: Kd=13nM
    2 4s0n:D
    (1.501)    		 BS01 >4s0n:E (identical to 4a75:D, 4a75:H, 8dqx:I, 2es2:B, 5fhe:C, 5fte:D, 8gms:S, 8gmt:S, 8gmu:S, 2gxa:M, 2hax:C, 2hax:D, 8hwa:S, 8hwb:S, 8hwf:S, 8hwg:S, 8hwh:S, 5ip3:F, 8jpx:E, 8jpx:F, 3kqk:C, 3kqk:D, 3kql:E, 3kql:F, 3kqn:E, 7lar:G, 4ljr:C, 1mje:C, 2mna:B, 5o6d:C, 5o6d:D, 7otj:C, 7otj:D, 4oww:L, 6s3h:D, 6s3n:C, 8xj7:X, 8xj8:X, 7ywa:S)
    tttttt
    		 2.3.2.27
    3.6.4.-    		 GO:0003676 ... Q14527 26051180 PDBbind: Kd=13nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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