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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3t5h:A
    (2.35)    		 BS02 >3t5h:C (identical to 2agp:C, 2agp:E, 2bqr:P, 2bqu:P, 2br0:P, 2c22:P, 2c28:P, 2c2d:P, 5edw:P, 2imw:S, 2j6t:P, 4jv1:C, 4jv2:C, 7kle:P, 7klf:P, 3pvx:C, 3pw0:C, 3pw2:C, 3pw4:C, 3pw5:C, 2r8h:P, 2r8i:P, 4rua:P, 1ryr:B, 3t5j:C, 2v4r:P, 6vg6:P, 6vg6:B, 6vgm:B, 6vgm:P, 2w7o:P, 2w7p:P, 2w9c:C, 2w9c:D, 2xca:P, 2xcp:E, 2xcp:P)
    gggggaaggattc
    		 2.7.7.7 GO:0000287 ... Q97W02 22313351
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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