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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5l8r:1 (2.6) BS15 CLA ? GO:0009416 ... E1C9L2 28248295
    2 5l8r:A (2.6) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 28248295
    3 5l8r:A (2.6) BS47 CLA 1.97.1.12 GO:0000287 ... P05310 28248295
    4 5l8r:A (2.6) BS48 CLA 1.97.1.12 GO:0000287 ... P05310 28248295
    5 5l8r:A (2.6) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 28248295
    6 5l8r:B (2.6) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    7 5l8r:B (2.6) BS02 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    8 5l8r:B (2.6) BS03 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    9 5l8r:B (2.6) BS04 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    10 5l8r:B (2.6) BS05 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    11 5l8r:B (2.6) BS06 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    12 5l8r:B (2.6) BS07 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    13 5l8r:B (2.6) BS08 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    14 5l8r:B (2.6) BS09 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    15 5l8r:B (2.6) BS10 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    16 5l8r:B (2.6) BS11 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    17 5l8r:B (2.6) BS12 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    18 5l8r:B (2.6) BS13 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    19 5l8r:B (2.6) BS14 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    20 5l8r:B (2.6) BS15 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    21 5l8r:B (2.6) BS16 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    22 5l8r:B (2.6) BS17 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    23 5l8r:B (2.6) BS18 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    24 5l8r:B (2.6) BS19 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    25 5l8r:B (2.6) BS20 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    26 5l8r:B (2.6) BS21 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    27 5l8r:B (2.6) BS22 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    28 5l8r:B (2.6) BS23 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    29 5l8r:B (2.6) BS24 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    30 5l8r:B (2.6) BS25 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    31 5l8r:B (2.6) BS26 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    32 5l8r:B (2.6) BS27 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    33 5l8r:B (2.6) BS28 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    34 5l8r:B (2.6) BS29 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    35 5l8r:B (2.6) BS30 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    36 5l8r:B (2.6) BS31 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    37 5l8r:B (2.6) BS32 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    38 5l8r:B (2.6) BS33 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    39 5l8r:B (2.6) BS34 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    40 5l8r:B (2.6) BS35 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    41 5l8r:B (2.6) BS36 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    42 5l8r:B (2.6) BS37 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    43 5l8r:B (2.6) BS38 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    44 5l8r:B (2.6) BS39 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    45 5l8r:B (2.6) BS40 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    46 5l8r:B (2.6) BS41 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    47 5l8r:B (2.6) BS42 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    48 5l8r:B (2.6) BS43 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    49 5l8r:B (2.6) BS44 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    50 5l8r:B (2.6) BS45 PQN 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    51 5l8r:B (2.6) BS46 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    52 5l8r:B (2.6) BS47 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    53 5l8r:B (2.6) BS48 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    54 5l8r:B (2.6) BS49 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    55 5l8r:B (2.6) BS50 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    56 5l8r:F (2.6) BS04 CLA ? GO:0009507 ... A0A0M3KL12 28248295
    57 5l8r:G (2.6) BS01 CLA ? GO:0009522 ... Q9S7N7 28248295
    58 5l8r:G (2.6) BS02 CLA ? GO:0009522 ... Q9S7N7 28248295
    59 5l8r:H (2.6) BS01 CLA ? GO:0009507 ... A0A0M3KL10 28248295
    60 5l8r:I (2.6) BS01 CLA ? GO:0009507 ... P17227 28248295
    61 5l8r:I (2.6) BS02 CLA ? GO:0009507 ... P17227 28248295
    62 5l8r:I (2.6) BS03 CLA ? GO:0009507 ... P17227 28248295
    63 5l8r:I (2.6) BS04 CLA ? GO:0009507 ... P17227 28248295
    64 5l8r:J (2.6) BS02 CLA ? GO:0009507 ... D5MAL3 28248295
    65 5l8r:L (2.6) BS03 CLA ? GO:0009522 ... E1C9L1 28248295
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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