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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wm6:A (2.7) BS51 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    2 8wm6:A (2.7) BS52 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    3 8wm6:A (2.7) BS53 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    4 8wm6:A (2.7) BS54 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    5 8wm6:B (2.7) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    6 8wm6:B (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    7 8wm6:B (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    8 8wm6:B (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    9 8wm6:B (2.7) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    10 8wm6:B (2.7) BS06 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    11 8wm6:B (2.7) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    12 8wm6:B (2.7) BS08 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    13 8wm6:B (2.7) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    14 8wm6:B (2.7) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    15 8wm6:B (2.7) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    16 8wm6:B (2.7) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    17 8wm6:B (2.7) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    18 8wm6:B (2.7) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    19 8wm6:B (2.7) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    20 8wm6:B (2.7) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    21 8wm6:B (2.7) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    22 8wm6:B (2.7) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    23 8wm6:B (2.7) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    24 8wm6:B (2.7) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    25 8wm6:B (2.7) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    26 8wm6:B (2.7) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    27 8wm6:B (2.7) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    28 8wm6:B (2.7) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    29 8wm6:B (2.7) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    30 8wm6:B (2.7) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    31 8wm6:B (2.7) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    32 8wm6:B (2.7) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    33 8wm6:B (2.7) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    34 8wm6:B (2.7) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    35 8wm6:B (2.7) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    36 8wm6:B (2.7) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    37 8wm6:B (2.7) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    38 8wm6:B (2.7) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    39 8wm6:B (2.7) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    40 8wm6:B (2.7) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    41 8wm6:B (2.7) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    42 8wm6:B (2.7) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    43 8wm6:B (2.7) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    44 8wm6:B (2.7) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    45 8wm6:B (2.7) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    46 8wm6:B (2.7) BS42 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    47 8wm6:B (2.7) BS43 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    48 8wm6:B (2.7) BS44 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    49 8wm6:B (2.7) BS45 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    50 8wm6:B (2.7) BS46 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    51 8wm6:B (2.7) BS47 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    52 8wm6:B (2.7) BS48 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    53 8wm6:B (2.7) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    54 8wm6:B (2.7) BS50 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    55 8wm6:B (2.7) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    56 8wm6:B (2.7) BS52 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    57 8wm6:B (2.7) BS53 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    58 8wm6:B (2.7) BS54 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    59 8wm6:B (2.7) BS55 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    60 8wm6:F (2.7) BS03 CLA ? N/A A6MVU7 38734819
    61 8wm6:F (2.7) BS04 CLA ? N/A A6MVU7 38734819
    62 8wm6:F (2.7) BS05 CLA ? N/A A6MVU7 38734819
    63 8wm6:I (2.7) BS01 CLA ? GO:0009507 ... A6MVV1 38734819
    64 8wm6:I (2.7) BS02 CLA ? GO:0009507 ... A6MVV1 38734819
    65 8wm6:I (2.7) BS03 CLA ? GO:0009507 ... A6MVV1 38734819
    66 8wm6:I (2.7) BS04 CLA ? GO:0009507 ... A6MVV1 38734819
    67 8wm6:J (2.7) BS04 CLA ? GO:0009507 ... A6MVU6 38734819
    68 8wm6:L (2.7) BS05 CLA ? GO:0009507 ... A6MVV8 38734819
    69 8wm6:L (2.7) BS06 CLA ? GO:0009507 ... A6MVV8 38734819
    70 8wm6:L (2.7) BS07 CLA ? GO:0009507 ... A6MVV8 38734819
    71 8wm6:M (2.7) BS01 CLA ? GO:0009507 ... A6MVT4 38734819
    72 8wm6:R (2.7) BS01 CLA N/A N/A N/A 38734819
    73 8wm6:R (2.7) BS02 CLA N/A N/A N/A 38734819
    74 8wm6:R (2.7) BS03 CLA N/A N/A N/A 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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