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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8av4:A
    (1.6)    		 BS01 >8av4:B (identical to 8afn:B, 8ai0:B, 8alr:B, 8alt:B, 8alv:B, 8alw:B, 8am7:B, 8anf:B, 8aoy:B, 8aps:B, 8aq1:B, 8aqc:B, 8aqe:B, 8aqz:B, 8ar4:B, 8ar5:B, 8arg:B, 8aro:B, 8arq:B, 8arr:B, 8arw:B, 8arx:B, 8ary:B, 8arz:B, 8as1:B, 8at9:B, 8atp:B, 8au2:B, 8aus:B, 8auy:B, 8av3:B, 8av7:B, 8av8:B, 8awg:B, 8axe:B, 8axu:B, 8aze:B, 8b39:B, 7b9m:B, 7b9r:B, 7b9t:B, 7ba7:B, 7ba8:B, 7ba9:B, 7baa:B, 7bab:B, 8bwj:B, 8bwx:B, 8bwz:B, 8bx0:B, 8bx3:B, 8bx4:B, 8bxi:B, 8bxm:B, 8bxn:B, 8bxo:B, 8bxq:B, 8bxs:B, 8by9:B, 8byb:B, 8byc:B, 8byd:B, 8bye:B, 8byf:B, 8byg:B, 8byo:B, 8byy:B, 8byz:B, 8bz0:B, 8bz9:B, 8bza:B, 8bzb:B, 8bzc:B, 8bzd:B, 8bze:B, 8bzf:B, 8bzg:B, 8bzh:B, 8bzt:B, 8c04:B, 8c0k:B, 8c0l:B, 8c4f:B, 8c4g:B, 6hhp:B, 6hkb:B, 6hkf:B, 6hmt:B, 6hmu:B, 6hn2:B, 4jc3:B, 4jdd:B, 5n10:F, 7nfw:B, 7niz:B, 7opw:B, 7oq7:B, 7oq8:B, 7pwt:B, 7pwz:B, 6tjm:B, 6tl3:B)
    FPATV
    		 ? GO:0000122 ... P31947 37676236
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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