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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3sv3:A
    (2.1)    		 BS01 >3sv3:B (identical to 4bwj:B, 4c8k:B, 4cch:B, 4df4:B, 4df8:B, 4dfj:B, 4dfk:B, 4dfp:B, 4dle:B, 4dlg:B, 5e41:B, 4elt:B, 4elv:B, 2ktq:B, 3ktq:B, 4ktq:B, 3m8r:B, 3m8s:B, 4n56:B, 4n5s:B, 5nkl:B, 3ojs:B, 3oju:B, 3py8:B, 3rr7:B, 3sv4:B, 3syz:B, 5szt:B, 3t3f:B, 5w6k:B, 5w6q:B, 5w6q:E, 5w6q:H, 4xiu:B, 5ytc:B, 5ytd:B, 5yte:B, 5ytf:B, 5ytg:B, 5z3n:B)
    gaccacggcgcc
    		 2.7.7.7 GO:0001882 ... P19821 22660438
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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