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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8uh4:M
    (3.72)    		 BS02 >8uh4:AN (identical to 8uh4:AA, 8uh4:AB, 8uh4:AC, 8uh4:AD, 8uh4:AE, 8uh4:AF, 8uh4:AG, 8uh4:AH, 8uh4:AI, 8uh4:AJ, 8uh4:AK, 8uh4:AL, 8uh4:AM, 8uh4:AO, 8uh4:AP, 8uh4:AQ, 8uh4:AR, 8uh4:AS, 8uh4:AT, 8uh4:AU, 8uh4:AV, 8uh4:AW, 8uh4:AX, 8uh4:AY, 8uh4:AZ, 8uh4:Aa, 8uh4:Ab, 8uh4:Ac, 8uh4:Ad, 8uh4:Ae, 8uh4:Af, 8uh4:Ag, 8uh4:Ah, 8uh4:Ai, 8uh4:Aj, 8uh4:Ak, 8uh4:Al, 8uh4:Am, 8uh4:An, 8uh4:Ao, 8uh4:Ap, 8uh4:Aq, 8uh4:Ar, 8uh4:As, 8uh4:At, 8uh4:Au, 8uh4:Av, 8uh4:Aw, 8uh4:Ax, 8uh4:Ay, 8uh4:Az, 8uh4:A1, 8uh4:A2, 8uh4:A3, 8uh4:A4, 8uh4:A5, 8uh4:A6, 8uh4:A7, 8uh4:A8)
    aaaatccca
    		 ? GO:0003677 ... P06448 N/A
    2 8uh4:N
    (3.72)    		 BS01 >8uh4:AN (identical to 8uh4:AA, 8uh4:AB, 8uh4:AC, 8uh4:AD, 8uh4:AE, 8uh4:AF, 8uh4:AG, 8uh4:AH, 8uh4:AI, 8uh4:AJ, 8uh4:AK, 8uh4:AL, 8uh4:AM, 8uh4:AO, 8uh4:AP, 8uh4:AQ, 8uh4:AR, 8uh4:AS, 8uh4:AT, 8uh4:AU, 8uh4:AV, 8uh4:AW, 8uh4:AX, 8uh4:AY, 8uh4:AZ, 8uh4:Aa, 8uh4:Ab, 8uh4:Ac, 8uh4:Ad, 8uh4:Ae, 8uh4:Af, 8uh4:Ag, 8uh4:Ah, 8uh4:Ai, 8uh4:Aj, 8uh4:Ak, 8uh4:Al, 8uh4:Am, 8uh4:An, 8uh4:Ao, 8uh4:Ap, 8uh4:Aq, 8uh4:Ar, 8uh4:As, 8uh4:At, 8uh4:Au, 8uh4:Av, 8uh4:Aw, 8uh4:Ax, 8uh4:Ay, 8uh4:Az, 8uh4:A1, 8uh4:A2, 8uh4:A3, 8uh4:A4, 8uh4:A5, 8uh4:A6, 8uh4:A7, 8uh4:A8)
    aaaatccca
    		 ? GO:0003677 ... P06448 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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